View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_6 (Length: 636)
Name: NF20151_high_6
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 14 - 378
Target Start/End: Complemental strand, 31534537 - 31534172
Alignment:
| Q |
14 |
atcatccatttatccgatggagccggagcaataccatcacaagtcagagcgtgcaagacctggttgcaacgatcgtccgacccaatcaatcagaaataac |
113 |
Q |
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||||||||||||||| |||||||||||| |||||| |||||||| |||||||| |||||||||||| |||||| |||| ||||||||||||| ||||||| |
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| T |
31534537 |
atcatccatttatccaatggagccggagtaataccgtcacaagttagagcgtgtaagacctggttgaaacgattgtccaacccaatcaatcaaaaataac |
31534438 |
T |
|
| Q |
114 |
gatcattatctacattggtaagctcttttagaagttgataacaaactat---ataatcatcaacaaacatgtcatgtaggcacacaattacgcgcaagta |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
31534437 |
gatcattatctacactggtaagctcttttagaagttgataacaaactatctgataattatcaacaaacatgtcatgtaggcacgcaattaagcgtaagta |
31534338 |
T |
|
| Q |
211 |
acacataaagtggttaaagtaaaagtcaatttaaaaaggacactggactgagctatatcactagcggtttaannnnnnnnnnnnnataacaactattatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
31534337 |
acacataaagtggttaaagtaaaagtcaatttaaaaaggacactggattgagctatatcactagcggtttaa--tttttctttttataacaactattatt |
31534240 |
T |
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| Q |
311 |
ttgcatctccatttttcttttcacacccctttatatttggaatttacttttcttaaataccttcactc |
378 |
Q |
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| T |
31534239 |
ttgcatctccatttttcttttcacacccctttatatttggaatttacttttcttaaataccttcactc |
31534172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 384 - 586
Target Start/End: Complemental strand, 31533991 - 31533789
Alignment:
| Q |
384 |
aaaattataattaccaacaatttgttnnnnnnntatattggcttaactctnnnnnnnntcaccgtaaaaatcatattaccaaatttaatttttattttat |
483 |
Q |
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| T |
31533991 |
aaaattataattactaacaatttgttaaaaaaatatattggcttaactctaaaaaaaatcaccgtaaaaatcatattaccaaatttaatttttattttat |
31533892 |
T |
|
| Q |
484 |
gtctgtataacnnnnnnnngcacacatgtattaatcacatctcaaaatgtaaatatctgtgaaatcattttaaaagccgacataataataaagagtcatc |
583 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533891 |
gtctgtataacttttttttgcacacatgtattaatcacatctcaaaatgtaaatatttgtgaaatcattttaaaagccgacataataataaagagtcatc |
31533792 |
T |
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| Q |
584 |
ttc |
586 |
Q |
| |
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||| |
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| T |
31533791 |
ttc |
31533789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 21545063 - 21544923
Alignment:
| Q |
14 |
atcatccatttatccgatggagccggagcaataccatcacaagtcagagcgtgcaagacctggttgcaacgatcgtccgacccaatcaatcagaaataac |
113 |
Q |
| |
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|||||||||||||| |||| ||| || |||||||||||| |||||||| |||||||||| |||| | | | ||||||| ||||||||| |||| |
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| T |
21545063 |
atcatccatttatctgatgtagcacgaccaataccatcaccggtcagagcatgcaagacctcgttgaattgtttatccgaccaaatcaatcaccgataat |
21544964 |
T |
|
| Q |
114 |
gatcattatctacattggtaagctcttttagaagttgataa |
154 |
Q |
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| ||| ||||| || | ||||||||||||||||||||||| |
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| T |
21544963 |
gctcactatcttcaccgttaagctcttttagaagttgataa |
21544923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 14294737 - 14294597
Alignment:
| Q |
14 |
atcatccatttatccgatggagccggagcaataccatcacaagtcagagcgtgcaagacctggttgcaacgatcgtccgacccaatcaatcagaaataac |
113 |
Q |
| |
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||||||||||| | || |||||| || |||||||||||| || || ||||| |||| ||| ||| | |||| |||||| ||||||||| | ||||| |
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| T |
14294737 |
atcatccattttttcggtggagcaagaccaataccatcactggtaagggcgtgtaagatctgcttgaagcgattttccgactcaatcaatcggcgataac |
14294638 |
T |
|
| Q |
114 |
gatcattatctacattggtaagctcttttagaagttgataa |
154 |
Q |
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| || ||||| || | ||||||||||||||||||||||| |
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| T |
14294637 |
ggacactatcttcaccgttaagctcttttagaagttgataa |
14294597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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