View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_65 (Length: 364)
Name: NF20151_high_65
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_65 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 15662 - 15321
Alignment:
| Q |
16 |
attgatgtatttagtccaaattattaactagatacataaactttattttatccatgcataaataaactgtattaaannnnnnnnnnnnnattattgaaaa |
115 |
Q |
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| T |
15662 |
attgatgtatttagtccaaattatcaactagatacataaactttattttatccatgcataaacaaacttttttaaatttttttatttttattattgaaaa |
15563 |
T |
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| Q |
116 |
tagggagagcaaaaacaacatacaaatcacacttttaatgcataatacagtcaaatttagactaaattactaatttacgatacaatttggggcaaggaaa |
215 |
Q |
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| T |
15562 |
tagg-agagcaaaaacaacagacaaatcacacttttaatgaataatacagtcaaatttagactaaattactaatttacgatacaatttggggcaaggaaa |
15464 |
T |
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| Q |
216 |
ccctaaagtcttccaaataccattgttgctaccatatggaaacacgactacaacttgattgcacacatattttagtgactccaacgaatcatcctcaaat |
315 |
Q |
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| T |
15463 |
ccctaaagtcttccaaataccattgttgctaccatgtggaaacacgattacaacttgattgcacacatattttagtgactccgatgaatcatcctcaaac |
15364 |
T |
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| Q |
316 |
cgaaccaaaccaaacaaacttactccaaaattaaccgatccac |
358 |
Q |
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| T |
15363 |
cgaaccaaaccaaacaaacttactccaaaattaaccgatccac |
15321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18129594 - 18129547
Alignment:
| Q |
16 |
attgatgtatttagtccaaattattaactagatacataaactttattt |
63 |
Q |
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| T |
18129594 |
attgatgtatttagttcaaatttttaactaaatacatcaactttattt |
18129547 |
T |
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