View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_73 (Length: 342)
Name: NF20151_high_73
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_73 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 3620147 - 3619829
Alignment:
| Q |
17 |
gacacaagtgcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatcaaaaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3620147 |
gacacaagtgcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatcaaaaaag |
3620048 |
T |
|
| Q |
117 |
agttcatagatgaagatgatattcaaaagcttgtatattttaaggctgtgataaaagagacattaagattctattcaccagcacccctagccccaagaga |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
3620047 |
agttcatagatgaagatgatattcaaaagtttgtatattttaaggctgtgataaaagagacattaagattctattcaccagcaccactagcccctagaga |
3619948 |
T |
|
| Q |
217 |
gaccagtaaaggtttcattctaaatggatataaaatagaaccaaaaacgtcggtgtttgtgaatatttgggccattcatagggaccctgagacatggaaa |
316 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||| | |||||||||||||| |||||||||||| |
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| T |
3619947 |
gaccagtaaaagtttcacactaaatggatataaaatagaaccaaaaacatcagtgtttgtgagtatttggtctattcatagggaccccgagacatggaaa |
3619848 |
T |
|
| Q |
317 |
gaccctgacgagtattatc |
335 |
Q |
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||||| || |||| ||||| |
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| T |
3619847 |
gaccccgatgagttttatc |
3619829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 3630529 - 3630205
Alignment:
| Q |
17 |
gacacaagtgcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacat------ca |
110 |
Q |
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||||||| | |||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3630529 |
gacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggca |
3630430 |
T |
|
| Q |
111 |
aaaaagagttcatagatgaagatgatattcaaaagcttgtatattttaaggctgtgataaaagagacattaagattctattcaccagcacccctagcccc |
210 |
Q |
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| T |
3630429 |
aaaaagagttcatagatgaagatgatattcaaaagcttgtatatcttaaggctgtgataaaagaaacattaagattctatgcaccagcaccactagcccc |
3630330 |
T |
|
| Q |
211 |
aagagagaccagtaaaggtttcattctaaatggatataaaatagaaccaaaaacgtcggtgtttgtgaatatttgggccattcatagggaccctgagaca |
310 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| || |
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| T |
3630329 |
aagagagaccagtaaaagtttcattctaaatggacataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgaggca |
3630230 |
T |
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| Q |
311 |
tggaaagaccctgacgagtattatc |
335 |
Q |
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| T |
3630229 |
tggaaagatcccgacgagttttatc |
3630205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 15556 - 15880
Alignment:
| Q |
17 |
gacacaagtgcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacat------ca |
110 |
Q |
| |
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||||||| | |||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15556 |
gacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggca |
15655 |
T |
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| Q |
111 |
aaaaagagttcatagatgaagatgatattcaaaagcttgtatattttaaggctgtgataaaagagacattaagattctattcaccagcacccctagcccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
15656 |
aaaaagagttcatagatgaagatgatattcaaaagcttgtatatcttaaggctgtgataaaagaaacattaagattctatgcaccagcaccactagcccc |
15755 |
T |
|
| Q |
211 |
aagagagaccagtaaaggtttcattctaaatggatataaaatagaaccaaaaacgtcggtgtttgtgaatatttgggccattcatagggaccctgagaca |
310 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| || |
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| T |
15756 |
aagagagaccagtaaaagtttcattctaaatggacataaaatagaaccaaaaacatcagtgtttgtgaatatttgggccattcatagggaccccgaggca |
15855 |
T |
|
| Q |
311 |
tggaaagaccctgacgagtattatc |
335 |
Q |
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|||||||| || ||||||| ||||| |
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| T |
15856 |
tggaaagatcccgacgagttttatc |
15880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 8979192 - 8979268
Alignment:
| Q |
110 |
aaaaaagagttcatagatgaagatgatattcaaaagcttgtatattttaaggctgtgataaaagagacattaagatt |
186 |
Q |
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|||||||| || |||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||| |
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| T |
8979192 |
aaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaagagacattaagatt |
8979268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 8966598 - 8966432
Alignment:
| Q |
26 |
gcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatc------aaaaaagagt |
119 |
Q |
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||||||||||||||||||| || ||| | ||||| || ||||||| ||||||||||| |||||||||||||||||| | |||||||| | |
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| T |
8966598 |
gcagccacatcagtttgggctataacctccctgataaaaaacccaagagtaatgaagaaagtacaagaagaaattagaaacttgggaagtaaaaaagaat |
8966499 |
T |
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| Q |
120 |
tcatagatgaagatgatattcaaaagcttgtatattttaaggctgtgataaaagagacattaagatt |
186 |
Q |
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||||||| ||| ||||||||||||| | |||||| ||||| |||||||||||||| || ||||| |
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| T |
8966498 |
tcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagatt |
8966432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 20074378 - 20074255
Alignment:
| Q |
27 |
cagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaa--ca----tcaaaaaagagtt |
120 |
Q |
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|||||||| |||| |||| ||||| | ||||||||| |||||||||| ||||||||||| ||| |||| |||||||| || | |||||||| || |
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| T |
20074378 |
cagccacaacagtatgggctatgactgcattaataaaaaatccaagagtaatgaagaaagtacaacaagagattagaaattcaaaagttaaaaaagaatt |
20074279 |
T |
|
| Q |
121 |
catagatgaagatgatattcaaaa |
144 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
20074278 |
tatagatgaagatgatatacaaaa |
20074255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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