View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_76 (Length: 336)
Name: NF20151_high_76
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 10261811 - 10262152
Alignment:
| Q |
1 |
aaatctaaacagccagataatgacatttctcaatatcataatataacannnnnnnnncgcacaatatcataatattgatttttcttacacaatattgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
10261811 |
aaatctaaacagccagataatgacatttctcaatatcataatataacattttttttg-gcacagtatcataatattgattttttttacacaatattgtaa |
10261909 |
T |
|
| Q |
101 |
tataacttagaaaatctgtcatgcatattgattaaggaatgcataa-----------------atagaaaatttatattagaaatacaaggcaaagtagt |
183 |
Q |
| |
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|||||||||||||||||||| || | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10261910 |
tataacttagaaaatctgtcgtggacattgattaaggaaggcataaataaaaaatttatataaatagaaaatttatattagaaatacaaggcaaagtagt |
10262009 |
T |
|
| Q |
184 |
ctcaaagtaacattttaagataaatacatgtgtgattactctttttaaaccattcttctcgtgtgatgaatatgattgtttatattgtcctgactttgaa |
283 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10262010 |
ttcaaagtaacattttaagataaatacatgtgtgattactctttttaaaccattattctcgtgtgatgaatatgattgtttatgttgtcctgactttgaa |
10262109 |
T |
|
| Q |
284 |
tatattacatcattgtctgtcatttgttggtattaatcttcat |
326 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
10262110 |
tatattgcatcattacctgtcatttgttggtattaatcttcat |
10262152 |
T |
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