View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_77 (Length: 332)
Name: NF20151_high_77
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_77 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 3299809 - 3300107
Alignment:
| Q |
19 |
caactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299809 |
caactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaa |
3299908 |
T |
|
| Q |
119 |
caaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299909 |
caaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaa |
3300008 |
T |
|
| Q |
219 |
caactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300009 |
caactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgt |
3300107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 3392702 - 3393000
Alignment:
| Q |
19 |
caactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392702 |
caactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaa |
3392801 |
T |
|
| Q |
119 |
caaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392802 |
caaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaa |
3392901 |
T |
|
| Q |
219 |
caactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392902 |
caactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgt |
3393000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 1163489 - 1163333
Alignment:
| Q |
49 |
atccccctttagaagacctttttatccattggaggatttgcttgatggatgat---ccacttacaagcttaaacaaacatcacttctattgatgttttgt |
145 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163489 |
atcccccttttatagacctttttttccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgt |
1163390 |
T |
|
| Q |
146 |
tacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctattt |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1163389 |
tacttccaataacaaaaacaaggaagatgcttttcatttattagcttttttatattt |
1163333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 40418614 - 40418758
Alignment:
| Q |
62 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac--c |
159 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || |||||||||| |||||||||| | |
|
|
| T |
40418614 |
agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaac |
40418713 |
T |
|
| Q |
160 |
aaaa--caaggaagatgcttttcatttattagcttttttctattt |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
40418714 |
aaaaatcaaggaagatgcttttcatttattaggttctttctattt |
40418758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 1163288 - 1163224
Alignment:
| Q |
234 |
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtg |
298 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163288 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtg |
1163224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 1850205 - 1850293
Alignment:
| Q |
19 |
caactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccactt |
107 |
Q |
| |
|
|||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1850205 |
caactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctactt |
1850293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
| Q |
198 |
tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa |
288 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850346 |
tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa |
1850444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 38988036 - 38988180
Alignment:
| Q |
62 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- |
160 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | ||||||||||||| |||||||||| | |
|
|
| T |
38988036 |
agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaac |
38988135 |
T |
|
| Q |
161 |
---aaacaaggaagatgcttttcatttattagcttttttctattt |
202 |
Q |
| |
|
|| |||||||| |||| |||||||||||| || ||||||||| |
|
|
| T |
38988136 |
aacaatcaaggaagctgctcttcatttattaggttctttctattt |
38988180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 39880151 - 39880297
Alignment:
| Q |
62 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- |
160 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| || ||||||||| | |
|
|
| T |
39880151 |
agacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgttccaataataac |
39880249 |
T |
|
| Q |
161 |
------aaacaaggaagatgcttttcatttattagcttttttctattt |
202 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39880250 |
aacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39880297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 39726755 - 39726906
Alignment:
| Q |
62 |
agacctttttatccattggaggatttgcttgatggatgatccac----ttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
157 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||| | | ||||||||||||| ||||||||| |
|
|
| T |
39726755 |
agaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataa |
39726854 |
T |
|
| Q |
158 |
ccaaaacaa-------ggaagatgcttttcatttattagcttttttctattt |
202 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39726855 |
taacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39726906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
| Q |
200 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
281 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39880327 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
39880405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
| Q |
200 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
281 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40418782 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
40418860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
| Q |
228 |
cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
281 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38988229 |
cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
38988282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
| Q |
58 |
tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
157 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | ||||||||||||| |||||||| |
|
|
| T |
44444543 |
tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa |
44444444 |
T |
|
| Q |
158 |
ccaaaa----caaggaagatgcttttcatttattagcttttttctattt |
202 |
Q |
| |
|
| |||| ||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
44444443 |
cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt |
44444395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
| Q |
62 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
157 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | ||||||||||||| ||||||||| |
|
|
| T |
25912046 |
agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa |
25911951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
| Q |
245 |
tgcaatttgcaatttctgtttgatatttatgtttatt |
281 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
25911821 |
tgcagtttgcaatttctgtttgatacttatgtttatt |
25911785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University