View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_8 (Length: 605)
Name: NF20151_high_8
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 9 - 590
Target Start/End: Original strand, 21101698 - 21102284
Alignment:
| Q |
9 |
agcaaaggactttacatccaataattaacaacattaagattaacattggaagactaacataaacaacttaatgacattataaaaataaatataaaaaccc |
108 |
Q |
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| T |
21101698 |
agcataggactttacatccaataattaacaacattaagactaacattggaagactaacataaacaacttaatgacattataaaaataaatataaaaaccc |
21101797 |
T |
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| Q |
109 |
actaaacacaaagattaaagacatttattgagttcgacctattgattaaannnnnnnnnctcttt-----cattttggatgcccaactcaaatttcaact |
203 |
Q |
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| T |
21101798 |
actaaacacaaagattaaagacatttattgagtttgacctattgattaaattcgttttttttttttttttcattttggatgcccaactcaaatttcaact |
21101897 |
T |
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| Q |
204 |
caaggttttccttcttggttgtttccaactcttcttgaagtaattgaacattatagtagttgaagtccctaattgtatgtccggatgaagctaacaagtg |
303 |
Q |
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| T |
21101898 |
caaggttttccttcttggtggtttccaactcttcttgaagtaattcaacattatagtagttgaagtccctaattgtatgtccggataaagctaacaagcg |
21101997 |
T |
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| Q |
304 |
atgcaccaatatagctgcaacatcatcctttgcatcaaactcagtttttgcatatcttccaatcgaaacagaaggttttctaactgatcccgaaaccaat |
403 |
Q |
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||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
21101998 |
atgaatcaatatagctgcaacatcttcctttgcatcaaactcagtttttgcatatcttccaatcgaaacagatggttttccaactgatcccgaaaccaat |
21102097 |
T |
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| Q |
404 |
gcaccataaaacctcatgtactcatatccagcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgagttgcatatttgagcaa |
503 |
Q |
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| T |
21102098 |
gaaccataaaacctcatgtactcatatccagcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgggttgcatatttgagcaa |
21102197 |
T |
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| Q |
504 |
gttccacttgaaggttgtgatgaatgacaaatttatcaatactagtgtcttcagcaataaatttagcatgagtagtgtcgacatagt |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||| ||||||||||||| ||||||| |
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| T |
21102198 |
gttccacttgaaggttgtgatgaatgacaaatttatcactactagtgtatttagccataaatttatcatgagtagtgtctacatagt |
21102284 |
T |
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