View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_80 (Length: 330)
Name: NF20151_high_80
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_80 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 37567240 - 37567547
Alignment:
| Q |
13 |
agatgaaattaatgca----atcatagatattgttggtgctgttcttcaatcgcaatacaatcatagtgtgatcggagaacaacaccaataatatttatt |
108 |
Q |
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| T |
37567240 |
agatgaaattaatgcacattatcatggatactgttggtgctgttcttcaatcgcaatacaatcgtagtgtgatcggagaacaacaccaataatatttatt |
37567339 |
T |
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| Q |
109 |
gtatcaaacaaacataccttgttttgagcaatttcagcttcgatgccaagaatcccagctgtgacatccatgataacaatcaagagacataaaaatatgc |
208 |
Q |
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| T |
37567340 |
gtatcaaacaaacataccttgttttgagcaatttcagcttcgatgccaagaatcccagctgtgacatccatgataacaatcaagagacataaaaatatgc |
37567439 |
T |
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| Q |
209 |
caacttctctagccatttctcagagaattaatttctttcttcctttctttcaagtatgcttttctttgccaagtgcaagctaagaaagagaggaaaagat |
308 |
Q |
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| T |
37567440 |
caacttctctagccatttctcagagaattaatttctttcttcctttctttcaagtatgcttttctttgccaagtgcaagctaagaaagagaggaaaagat |
37567539 |
T |
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| Q |
309 |
gtagcaat |
316 |
Q |
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| T |
37567540 |
gtagcaat |
37567547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 15516652 - 15516729
Alignment:
| Q |
120 |
acataccttgttttgagcaatttcagcttcgatgccaagaatcccagctgtgacatccatgataacaatcaagagaca |
197 |
Q |
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| T |
15516652 |
acataccttgttttgtgctatttcagcctcaaagccaagaataccagctgcaatatccatgataacaattaggagaca |
15516729 |
T |
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