View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_high_83 (Length: 326)

Name: NF20151_high_83
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_high_83
NF20151_high_83
[»] scaffold0003 (2 HSPs)
scaffold0003 (164-300)||(66054-66190)
scaffold0003 (48-164)||(65889-66005)
[»] chr6 (15 HSPs)
chr6 (164-300)||(27421173-27421309)
chr6 (52-164)||(26651937-26652049)
chr6 (52-164)||(26757905-26758017)
chr6 (163-304)||(26652098-26652238)
chr6 (163-304)||(26758066-26758206)
chr6 (45-145)||(26632565-26632665)
chr6 (45-145)||(26738541-26738641)
chr6 (63-158)||(31289644-31289739)
chr6 (48-164)||(27421358-27421474)
chr6 (164-254)||(31289794-31289885)
chr6 (1-42)||(26651314-26651355)
chr6 (1-42)||(26757282-26757323)
chr6 (1-42)||(26966309-26966350)
chr6 (1-42)||(26631665-26631706)
chr6 (1-42)||(26737640-26737681)


Alignment Details
Target: scaffold0003 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 66054 - 66190
Alignment:
Q  164 tcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttga 263  Q
    |||||||||| | ||| ||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  66054 tcacatcagtgctaaaaaaagttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttga 66153  T
Q  264 cgcggttcttcaaactttcgatccaggccaaatgttc 300  Q
    | || | | |||||||||| |||| || |||||||||    
T  66154 cacgatccctcaaactttcaatcccggtcaaatgttc 66190  T

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Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 65889 - 66005
Alignment:
Q  48 aatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatc 147  Q
    |||||||||||||||| ||||| || |||||||||| ||| ||||||||| |||||| |||||| || ||||||||| | ||||||||||| |||||| |    
T  65889 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 65988  T
Q  148 tatgaaatttgagtttt 164  Q
    | ||||||||| |||||    
T  65989 tgtgaaatttgcgtttt 66005  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 27421309 - 27421173
Alignment:
Q  164 tcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttga 263  Q
    |||||||||| | ||| ||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  27421309 tcacatcagtgctaaaaaaagttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttga 27421210  T
Q  264 cgcggttcttcaaactttcgatccaggccaaatgttc 300  Q
    | || | | |||||||||| |||| || |||||||||    
T  27421209 cacgatccctcaaactttcaatcccggtcaaatgttc 27421173  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 26651937 - 26652049
Alignment:
Q  52 gtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatg 151  Q
    |||| ||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  26651937 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26652036  T
Q  152 aaatttgagtttt 164  Q
    | ||||| |||||    
T  26652037 atatttgcgtttt 26652049  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 26757905 - 26758017
Alignment:
Q  52 gtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatg 151  Q
    |||| ||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  26757905 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26758004  T
Q  152 aaatttgagtttt 164  Q
    | ||||| |||||    
T  26758005 atatttgcgtttt 26758017  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 163 - 304
Target Start/End: Original strand, 26652098 - 26652238
Alignment:
Q  163 ttcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttg 262  Q
    ||||||||| | ||||| ||||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  26652098 ttcacatcattgccaaaaaaaat-gtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttg 26652196  T
Q  263 acgcggttcttcaaactttcgatccaggccaaatgttcgcag 304  Q
    | | | | | ||||||||| ||||   | |||||||||||||    
T  26652197 atgtgatccctcaaacttttgatctcagtcaaatgttcgcag 26652238  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 163 - 304
Target Start/End: Original strand, 26758066 - 26758206
Alignment:
Q  163 ttcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttg 262  Q
    ||||||||| | ||||| ||||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  26758066 ttcacatcattgccaaaaaaaat-gtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttg 26758164  T
Q  263 acgcggttcttcaaactttcgatccaggccaaatgttcgcag 304  Q
    | | | | | ||||||||| ||||   | |||||||||||||    
T  26758165 atgtgatccctcaaacttttgatctcagtcaaatgttcgcag 26758206  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 26632565 - 26632665
Alignment:
Q  45 cataatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaag 144  Q
    ||||||||||||||||||||  |||||||||||||||||  | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |||||    
T  26632565 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26632664  T
Q  145 a 145  Q
    |    
T  26632665 a 26632665  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 26738541 - 26738641
Alignment:
Q  45 cataatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaag 144  Q
    ||||||||||||||||||||  |||||||||||||||||  | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |||||    
T  26738541 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26738640  T
Q  145 a 145  Q
    |    
T  26738641 a 26738641  T

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Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 31289644 - 31289739
Alignment:
Q  63 acagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatgaaatttg 158  Q
    ||||||| |||||||||||  |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||| |||||    
T  31289644 acagctgcagcaacctgtactggatgttgataaatggttgccagagagtgcaacatattctcggtgaaaggttgttatcaagatctgtgatatttg 31289739  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 27421474 - 27421358
Alignment:
Q  48 aatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatc 147  Q
    |||||||||||||||| ||||| || |||||||||| ||| ||||||||| |||||| |||||| || ||||||||| | ||||||||||| |||||| |    
T  27421474 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 27421375  T
Q  148 tatgaaatttgagtttt 164  Q
    | ||||||||| |||||    
T  27421374 tgtgaaatttgcgtttt 27421358  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 31289794 - 31289885
Alignment:
Q  164 tcacatcagtcccaaacaaa-attgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggac 254  Q
    |||||||||| ||||| ||| | ||||||| ||  |||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  31289794 tcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattccctatggac 31289885  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26651314 - 26651355
Alignment:
Q  1 atttcaatctcagtacacaaattggaatccttatagaaagag 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  26651314 atttcaatttcagtacacaaattggaatccttatagaaagag 26651355  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26757282 - 26757323
Alignment:
Q  1 atttcaatctcagtacacaaattggaatccttatagaaagag 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  26757282 atttcaatttcagtacacaaattggaatccttatagaaagag 26757323  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26966309 - 26966350
Alignment:
Q  1 atttcaatctcagtacacaaattggaatccttatagaaagag 42  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  26966309 atttcaatcttagtacaaaaattggaatccttatagaaagag 26966350  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26631665 - 26631706
Alignment:
Q  1 atttcaatctcagtacacaaattggaatccttatagaaagag 42  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  26631665 atttcaatattagtacacaaattggaatccgtatagaaagag 26631706  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26737640 - 26737681
Alignment:
Q  1 atttcaatctcagtacacaaattggaatccttatagaaagag 42  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  26737640 atttcaatattagtacacaaattggaatccgtatagaaagag 26737681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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