View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_86 (Length: 315)
Name: NF20151_high_86
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_86 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 24837429 - 24837133
Alignment:
| Q |
1 |
ccacaccacgcagggagggaaaaacagacccatnnnnnnnccccagcagctgaaactccaaacaggtaacagtccagcagccatacagcaacgcaggtgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24837429 |
ccacaccacgcagggagggaaaaacagacccataaaaaatccccagcagctgaaactccaaacaggtaacagtccagcagccatacagcagcgcaggtgc |
24837330 |
T |
|
| Q |
101 |
aaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacttaaaaggcccaaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24837329 |
aaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggcccaaaaat |
24837230 |
T |
|
| Q |
201 |
ccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccaagct |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24837229 |
ccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccaagct |
24837133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 30871518 - 30871449
Alignment:
| Q |
114 |
agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccac |
183 |
Q |
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||||| |||||||||||||| ||| | |||||||||| | ||||||||||| | ||||||| ||||||| |
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| T |
30871518 |
agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgcccac |
30871449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 47 - 293
Target Start/End: Original strand, 28110866 - 28111112
Alignment:
| Q |
47 |
cagctgaaactccaaacaggtaacagtccagcagccatacagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaa |
146 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28110866 |
cagctgaaactccagacaggtaacagtccagcagccatacagcagcgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaa |
28110965 |
T |
|
| Q |
147 |
cagcagagcagcagcataccaaagcctcaacgcccacttaaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattca |
246 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28110966 |
cagcagagcagcagcataccaaagcctcaacgcccacctaaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattca |
28111065 |
T |
|
| Q |
247 |
taatacaaacaaaccggcaacttcaaacgactcaaaacccacctcca |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28111066 |
taatacaaacaaaccggcaacttcaaacgactcaaaacccacctcca |
28111112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28110804 - 28110836
Alignment:
| Q |
1 |
ccacaccacgcagggagggaaaaacagacccat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
28110804 |
ccacaccacgcagggagggaaaaacagacccat |
28110836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 33131359 - 33131427
Alignment:
| Q |
229 |
ggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccaagct |
297 |
Q |
| |
|
|||||||| |||||||| | | | |||||||||||||| ||||| |||||||| ||||||| ||||||| |
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| T |
33131359 |
ggattccatgtccattctttaaataaacaaaccggcaaattcaagcgactcaatacccaccgccaagct |
33131427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 85 - 293
Target Start/End: Complemental strand, 4028645 - 4028437
Alignment:
| Q |
85 |
acagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccact |
184 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | ||| | |
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| T |
4028645 |
acagcagcacaggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgca |
4028546 |
T |
|
| Q |
185 |
taaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaac |
284 |
Q |
| |
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||| || ||| |||| ||||||||||||||||| |||| |||| |||||||| |||||||| || ||||||||||||||||| ||||| || |||||||| |
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| T |
4028545 |
taacagaccccaaaaaccaccattaccgcaccagacactcttgcggattccaagtccattcgtagtacaaacaaaccggcaaattcaagcggctcaaaac |
4028446 |
T |
|
| Q |
285 |
ccacctcca |
293 |
Q |
| |
|
||| ||||| |
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|
| T |
4028445 |
ccatctcca |
4028437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 293
Target Start/End: Complemental strand, 34326569 - 34326362
Alignment:
| Q |
85 |
acagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccact |
184 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||||| |
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|
| T |
34326569 |
acagcagcacaggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacg |
34326470 |
T |
|
| Q |
185 |
taaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaac |
284 |
Q |
| |
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||| || ||| |||| ||||||||||||||||| |||| ||||||||||||| ||||||| || ||||||||||||||||| ||||| || |||||||| |
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| T |
34326469 |
taacagaccccaaaaaccaccattaccgcaccagacactcttgtggattccaagtccatttgtagtacaaacaaaccggcaa-ttcaagcggctcaaaac |
34326371 |
T |
|
| Q |
285 |
ccacctcca |
293 |
Q |
| |
|
||||||||| |
|
|
| T |
34326370 |
ccacctcca |
34326362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
| Q |
106 |
agcaggacagcaatgaggctgtcatatactcctagccaaaacagca |
151 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
35052330 |
agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca |
35052375 |
T |
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