View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_87 (Length: 315)
Name: NF20151_high_87
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_87 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38054020 - 38053790
Alignment:
| Q |
1 |
ttagtagaaggtaccgagttgcggaaaagatgtcatcaaacttcttctttaacgtggaaggatcttgaagtggccaatttgcttcatcttgatgaacgaa |
100 |
Q |
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| T |
38054020 |
ttagtagaaggtaccgagttgcggaaaagatgtcatcaaacttcttctttaacgtggaaggatcttgaagtggccaatttgcttcatcttgatgaacgaa |
38053921 |
T |
|
| Q |
101 |
tataacattttccaaaatggccttcgaaacacccatgagtgcaggaatctctcgatccatgtcagcacatctatagctaaggcaaactttctaatagagc |
200 |
Q |
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| T |
38053920 |
tataacattttccaaaatggccttcgaaacacccatgagtgcaggaatctctcgatccatgtcagcacatctatagctaaggcaaactttctaatagagc |
38053821 |
T |
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| Q |
201 |
agagcaaacaggtcaagttaattcgagaact |
231 |
Q |
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| T |
38053820 |
agagcaaacaggtcaagttaattcgagaact |
38053790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 38053758 - 38053725
Alignment:
| Q |
263 |
tcagccagtaaagtacataccataatataaatat |
296 |
Q |
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| T |
38053758 |
tcagccagtaaagtacataccataatataaatat |
38053725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 28720905 - 28720846
Alignment:
| Q |
170 |
tctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa |
229 |
Q |
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| T |
28720905 |
tctatagttaaggtaaacattccaatagagcagagcaaccaggtcaaattaatttgagaa |
28720846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 30254010 - 30254085
Alignment:
| Q |
154 |
gatccatgtcagcacatctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa |
229 |
Q |
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|||| |||| ||||| | ||||| ||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
30254010 |
gatctatgtgagcacgtatatagttaaggtaaacattccaatagagcagagcaaccaggtcaagttaatttgagaa |
30254085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 11237735 - 11237677
Alignment:
| Q |
171 |
ctatagctaaggcaaactttctaatagagcagagcaaacaggtcaagttaattcgagaa |
229 |
Q |
| |
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|||||| ||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
11237735 |
ctatagttaaggtaaacattctaatagagtagagcaaccaggtcaagttaatttgagaa |
11237677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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