View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_high_97 (Length: 289)

Name: NF20151_high_97
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_high_97
NF20151_high_97
[»] chr2 (2 HSPs)
chr2 (92-272)||(13000435-13000615)
chr2 (1-29)||(5676732-5676760)
[»] chr4 (2 HSPs)
chr4 (1-31)||(14137041-14137071)
chr4 (1-29)||(54151665-54151693)
[»] chr7 (2 HSPs)
chr7 (2-31)||(4227569-4227598)
chr7 (2-30)||(13017082-13017110)
[»] chr3 (4 HSPs)
chr3 (2-31)||(1757710-1757739)
chr3 (1-29)||(8127456-8127484)
chr3 (1-29)||(51250273-51250301)
chr3 (1-29)||(53633657-53633685)
[»] chr1 (4 HSPs)
chr1 (2-31)||(11661399-11661428)
chr1 (2-30)||(6094414-6094442)
chr1 (2-30)||(15729422-15729450)
chr1 (1-29)||(52267757-52267785)
[»] chr5 (1 HSPs)
chr5 (2-30)||(33645730-33645758)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 13000615 - 13000435
Alignment:
Q  92 ttggatttctcattgccatgtgctacacattcaaacaaaggtgggcattggtcaattgaatccctctaattatgatcaagaaacattcacgtggctcccc 191  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13000615 ttggatttctcattgccatgtgctacacattcaaacaaaggtaggcattggtcaattgaatccctctaattatgatcaagaaacattcacgtggctcccc 13000516  T
Q  192 tcctaggttctttttcatggtctagctaaatcagcaaggacaaaaactaaagccccaccctttgaaagttgtttttagaag 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  13000515 tcctaggttctttttcatggtctagctaaatcagcaaggacaaaaactaaagccccaccttttgaaagttatttttagaag 13000435  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5676760 - 5676732
Alignment:
Q  1 ttaccaactgagttaagctcacgaggaca 29  Q
    |||||||||||||||||||||||||||||    
T  5676760 ttaccaactgagttaagctcacgaggaca 5676732  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 14137071 - 14137041
Alignment:
Q  1 ttaccaactgagttaagctcacgaggacact 31  Q
    |||||||||||||||||||||||||||||||    
T  14137071 ttaccaactgagttaagctcacgaggacact 14137041  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54151665 - 54151693
Alignment:
Q  1 ttaccaactgagttaagctcacgaggaca 29  Q
    |||||||||||||||||||||||||||||    
T  54151665 ttaccaactgagttaagctcacgaggaca 54151693  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 4227569 - 4227598
Alignment:
Q  2 taccaactgagttaagctcacgaggacact 31  Q
    ||||||||||||||||||||||||||||||    
T  4227569 taccaactgagttaagctcacgaggacact 4227598  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 13017110 - 13017082
Alignment:
Q  2 taccaactgagttaagctcacgaggacac 30  Q
    |||||||||||||||||||||||||||||    
T  13017110 taccaactgagttaagctcacgaggacac 13017082  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 1757710 - 1757739
Alignment:
Q  2 taccaactgagttaagctcacgaggacact 31  Q
    ||||||||||||||||||||||||||||||    
T  1757710 taccaactgagttaagctcacgaggacact 1757739  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8127484 - 8127456
Alignment:
Q  1 ttaccaactgagttaagctcacgaggaca 29  Q
    |||||||||||||||||||||||||||||    
T  8127484 ttaccaactgagttaagctcacgaggaca 8127456  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 51250273 - 51250301
Alignment:
Q  1 ttaccaactgagttaagctcacgaggaca 29  Q
    |||||||||||||||||||||||||||||    
T  51250273 ttaccaactgagttaagctcacgaggaca 51250301  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 53633657 - 53633685
Alignment:
Q  1 ttaccaactgagttaagctcacgaggaca 29  Q
    |||||||||||||||||||||||||||||    
T  53633657 ttaccaactgagttaagctcacgaggaca 53633685  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 11661428 - 11661399
Alignment:
Q  2 taccaactgagttaagctcacgaggacact 31  Q
    ||||||||||||||||||||||||||||||    
T  11661428 taccaactgagttaagctcacgaggacact 11661399  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 6094442 - 6094414
Alignment:
Q  2 taccaactgagttaagctcacgaggacac 30  Q
    |||||||||||||||||||||||||||||    
T  6094442 taccaactgagttaagctcacgaggacac 6094414  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 15729450 - 15729422
Alignment:
Q  2 taccaactgagttaagctcacgaggacac 30  Q
    |||||||||||||||||||||||||||||    
T  15729450 taccaactgagttaagctcacgaggacac 15729422  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 52267785 - 52267757
Alignment:
Q  1 ttaccaactgagttaagctcacgaggaca 29  Q
    |||||||||||||||||||||||||||||    
T  52267785 ttaccaactgagttaagctcacgaggaca 52267757  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 33645730 - 33645758
Alignment:
Q  2 taccaactgagttaagctcacgaggacac 30  Q
    |||||||||||||||||||||||||||||    
T  33645730 taccaactgagttaagctcacgaggacac 33645758  T

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