View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_99 (Length: 287)
Name: NF20151_high_99
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_99 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 17347123 - 17347372
Alignment:
| Q |
1 |
aaggtactcgaatgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17347123 |
aaggtactcgaatgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaa |
17347222 |
T |
|
| Q |
101 |
gcttgttgaggtggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17347223 |
gcttgttgaggtggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
17347322 |
T |
|
| Q |
201 |
ccaccaaatgactactacattgttgtaacaacaaggttcacgtcacaggt |
250 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17347323 |
ccaccacatgactactacattgttgtcacaacaaggttcacgtcacaggt |
17347372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 17136681 - 17136444
Alignment:
| Q |
13 |
tgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggt |
112 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17136681 |
tgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggt |
17136582 |
T |
|
| Q |
113 |
ggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccaaatgac |
212 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17136581 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacatgac |
17136482 |
T |
|
| Q |
213 |
tactacattgttgtaacaacaaggttcacgtcacaggt |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17136481 |
tactacattgttgtcacaacaaggttcacgtcacaggt |
17136444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 37091303 - 37091115
Alignment:
| Q |
18 |
gcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggtggaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| || | || || || |||||||||||||| ||||| |||||||| || || ||||| ||||||| |
|
|
| T |
37091303 |
gcaggcaatacatacagattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaag |
37091204 |
T |
|
| Q |
118 |
gaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccacca |
206 |
Q |
| |
|
||| ||||| || |||||||||||||| || ||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37091203 |
gaatccacacactacaaaacacttatgattcccttgatattcatttggggcagagttactctgtattggttactgctgatcaaccacca |
37091115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University