View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_1 (Length: 714)

Name: NF20151_low_1
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_1
NF20151_low_1
[»] chr1 (3 HSPs)
chr1 (201-698)||(26415420-26415920)
chr1 (42-233)||(52891030-52891221)
chr1 (11-131)||(26415303-26415423)
[»] chr2 (7 HSPs)
chr2 (44-233)||(901482-901671)
chr2 (398-698)||(27985022-27985316)
chr2 (398-698)||(28071552-28071846)
chr2 (41-233)||(29889790-29889982)
chr2 (42-233)||(29884786-29884977)
chr2 (235-296)||(27985377-27985438)
chr2 (235-296)||(28071907-28071968)
[»] chr8 (9 HSPs)
chr8 (41-233)||(4751351-4751543)
chr8 (41-233)||(18346972-18347164)
chr8 (41-233)||(2409405-2409597)
chr8 (42-233)||(2404167-2404358)
chr8 (42-233)||(4746327-4746518)
chr8 (42-233)||(18342930-18343121)
chr8 (41-233)||(36962775-36962977)
chr8 (42-233)||(36959004-36959180)
chr8 (46-172)||(15695220-15695346)
[»] chr4 (3 HSPs)
chr4 (41-233)||(39544888-39545080)
chr4 (42-207)||(39571395-39571560)
chr4 (41-232)||(9406080-9406262)
[»] chr7 (2 HSPs)
chr7 (45-233)||(34042133-34042321)
chr7 (45-233)||(34047139-34047327)
[»] chr3 (2 HSPs)
chr3 (48-233)||(34531133-34531318)
chr3 (42-233)||(36394223-36394414)


Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 201 - 698
Target Start/End: Original strand, 26415420 - 26415920
Alignment:
Q  201 ataatgacaaataatatcatttgacttttctacggtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaa---a 297  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  26415420 ataatgacaaataatatcatttgacttttctacagtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaataaa 26415519  T
Q  298 gtaactgaaatttataactgctacttgtttatatactgaagccagcattccatgtgattagtacaaaataaaaggatccactttcaaccaaactttagtt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26415520 gtaactgaaatttataactgctacttgtttatatactgaagccagcattccatgtgattagtacaaaataaaaggatccactttcaaccaaactttagtt 26415619  T
Q  398 acattctgaaaatttacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctatggagaaacagcatctgaa 497  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26415620 acattctgaaaatatacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctgtggagaaacagcatctgaa 26415719  T
Q  498 gcaccggttaagcgcagaaacacactagctcttttatacgttgtaccattttccctctgttgtgtggcatctttaatgctttcatattcatattgcttat 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26415720 gcaccggttaagcgcagaaacacactagctcttttatacgttgtaccattttccctctgttgtgtggcatctttaatgctttcatattgatattgcttat 26415819  T
Q  598 tttttcttgacatgttattcttattcaccaagtcctttctattggcgtcattctgattcttcgaagcaatacccttcaaagaaacacttaagcgagaaaa 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26415820 tttttcttgacatgttattcttattcaccaagtcctttctattggcgtcattctgattcttcgaagcaatacccttcaaagaaacacttaagcgagaaaa 26415919  T
Q  698 c 698  Q
    |    
T  26415920 c 26415920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 52891221 - 52891030
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  52891221 tattgaaaaacatataagaaatcatataagagtttagaggaatgattctttttttttttatttctgcagtccaagactgtttatatataaaaaggaatta 52891122  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52891121 caataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 52891030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 26415303 - 26415423
Alignment:
Q  11 tgaactcaaatctgttaagtagcaaggtaaatattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26415303 tgaactcaaatctgttaagtagcaaggtaaatattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcag 26415402  T
Q  111 tccaagactgtttatatataa 131  Q
    |||||||||||||||||||||    
T  26415403 tccaagactgtttatatataa 26415423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 5e-98; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 901671 - 901482
Alignment:
Q  44 ttgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattaca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  901671 ttgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattaca 901572  T
Q  144 ataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  901571 ataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 901482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 398 - 698
Target Start/End: Complemental strand, 27985316 - 27985022
Alignment:
Q  398 acattctgaaaatttacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctatggagaaacagcatctgaa 497  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||    
T  27985316 acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa 27985217  T
Q  498 gcaccggttaagcgcagaaacacactagctcttttatacgttgtaccattttccctctgttgtgtggcatctttaatgctttcatattcatattgcttat 597  Q
    |||||||  |||||||||||||||||||||||||||||| ||| ||| ||||  ||||||||| || ||||||||||||||||||||| |||||||||||    
T  27985216 gcaccggccaagcgcagaaacacactagctcttttatacattgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttat 27985117  T
Q  598 tttttcttgacatgttattcttattcaccaagtcctttctattggcgtcattctgattcttcgaagcaatacccttcaaagaaacacttaagcgagaaaa 697  Q
    ||| ||||||||||||      ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||| | |||||||||||||    
T  27985116 tttctcttgacatgtt------attcaccaagtcctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaa 27985023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 398 - 698
Target Start/End: Complemental strand, 28071846 - 28071552
Alignment:
Q  398 acattctgaaaatttacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctatggagaaacagcatctgaa 497  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||    
T  28071846 acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa 28071747  T
Q  498 gcaccggttaagcgcagaaacacactagctcttttatacgttgtaccattttccctctgttgtgtggcatctttaatgctttcatattcatattgcttat 597  Q
    |||||||  |||||||||||||||||||||||||||||| ||| ||| ||||  ||||||||| || ||||||||||||||||||||| |||||||||||    
T  28071746 gcaccggccaagcgcagaaacacactagctcttttatacattgcaccgtttttgctctgttgtctgacatctttaatgctttcatattgatattgcttat 28071647  T
Q  598 tttttcttgacatgttattcttattcaccaagtcctttctattggcgtcattctgattcttcgaagcaatacccttcaaagaaacacttaagcgagaaaa 697  Q
    ||| ||||||||||||      ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||| | |||||||||||||    
T  28071646 tttctcttgacatgtt------attcaccaagtcctttccattggcatcattctgattcttcgaagcaacacccttcgaagaaaaatttaagcgagaaaa 28071553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 29889790 - 29889982
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 140  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29889790 atattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 29889889  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29889890 acaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 29889982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 29884786 - 29884977
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29884786 tattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 29884885  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29884886 caataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 29884977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 27985438 - 27985377
Alignment:
Q  235 gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaa 296  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27985438 gtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaa 27985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 28071968 - 28071907
Alignment:
Q  235 gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaa 296  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28071968 gtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaa 28071907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 2e-97; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 4751351 - 4751543
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 140  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4751351 atattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 4751450  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4751451 acaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 4751543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 18346972 - 18347164
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18346972 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 18347071  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18347072 acaataaacataatgacaaataatgtcttatcatgactaatgatggcataatatattctaataatgaccaataatatcatttgacttttctac 18347164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 2409405 - 2409597
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 140  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2409405 atattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 2409504  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2409505 acaataaacataatgacaaataatgtcttatcatgaataataatggcataatatattctaataatgaccaataatatcatttgacttttctac 2409597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 2404167 - 2404358
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2404167 tattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttatgcagtccaagactgtttatatataaaaaggaatta 2404266  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2404267 caataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 2404358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 4746327 - 4746518
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4746327 tattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagattgtttatatataaaaaggaatta 4746426  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4746427 caataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 4746518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 18342930 - 18343121
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342930 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 18343029  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18343030 caataaacataatgataaataatgtcttatcataactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 18343121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 36962775 - 36962977
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatata-taaaaaggaat 139  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  36962775 atattgaaaaacatataagaaatcatataagagattagagaaatgattctttcttattttatttatgcggtccaagactgtttatatattaaaaaggaat 36962874  T
Q  140 tac---------aataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttc 230  Q
    |||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36962875 tacaataaacataataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttc 36962974  T
Q  231 tac 233  Q
    |||    
T  36962975 tac 36962977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 36959004 - 36959180
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatata-taaaaaggaatt 140  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36959004 tattgaaaaatatataagaaatcatataagagatcagaggaatgattctttcttattttatttctgcagtccaagactgtttatatattaaaaaggaatt 36959103  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||||||                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36959104 acaataaacataatgaca----------------aactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 36959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 15695346 - 15695220
Alignment:
Q  46 gaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaat 145  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |    
T  15695346 gaaaaacatataagaaatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagt 15695247  T
Q  146 aaacataatgacagataatgtcttatc 172  Q
    ||||||||||||| ||||| |||||||    
T  15695246 aaacataatgacaaataatttcttatc 15695220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 39545080 - 39544888
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39545080 atattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttatgcagtccaagactgtttatatataaaaaggaatt 39544981  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39544980 acaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 39544888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 39571560 - 39571395
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39571560 tattgaaaaacatataagaaatcatataagagattagaggaatgattctttcttattttatttatgcagtccaagactgtttatatataaaaaggaatta 39571461  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatga 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571460 caataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatga 39571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 9406080 - 9406262
Alignment:
Q  41 atattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatt 140  Q
    |||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9406080 atattgaaaaacatataagaaatcatatgag---------gaatgactctttcttattttatttctacagtccaagactgtttatatataaaaaggaatt 9406170  T
Q  141 acaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttcta 232  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  9406171 acaataaacataatgacaaataatgtcttatcatgacaaataatggcataatatattcaaataatgaccaataatatcatttgacttttcta 9406262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 7e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 34042321 - 34042133
Alignment:
Q  45 tgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaa 144  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34042321 tgaaaaacatataagaaatcatataagagtttagaggaatgattctttcttattttatttcttcagtccaagactgtttatatataaaaaggaattacaa 34042222  T
Q  145 taaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  34042221 taaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccgataatatcatttgacttttctac 34042133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 34047327 - 34047139
Alignment:
Q  45 tgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaa 144  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34047327 tgaaaaacatataagaaatcatataagagtttagaggaatgattctttcttattttatttcttcagtccaagactgtttatatataaaaaggaattacaa 34047228  T
Q  145 taaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  34047227 taaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccgataatatcatttgacttttctac 34047139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 34531133 - 34531318
Alignment:
Q  48 aaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataa 147  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  34531133 aaaacatataagaaatcatatgagagattagaagaatgattctttcttattttatttctgcagtccaagactgtttatataggaaaaggaattacaataa 34531232  T
Q  148 acataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34531233 acataatgacaaataatgttttatcatgactaataatggcataatatattctaataacgaccaataatatcatttgacttttctac 34531318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 36394414 - 36394223
Alignment:
Q  42 tattgaaaaacatataagaaatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaatta 141  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||| |||| |||||||||| | |||||||||||||||| ||||  |||||||||||    
T  36394414 tattgaaaaacatataagaaatcatatgcaagattagaggaataattttttcatattttatttttacagtccaagactgtttttataggaaaaggaatta 36394315  T
Q  142 caataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 233  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| | ||||||||||||    
T  36394314 caataaacataatgacaaataatgtcttatcatgactaataatgacataatatattctaataatgatcaataatatcctctgacttttctac 36394223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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