View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_101 (Length: 308)

Name: NF20151_low_101
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_101
NF20151_low_101
[»] chr4 (3 HSPs)
chr4 (3-298)||(3283892-3284186)
chr4 (22-94)||(3267984-3268056)
chr4 (201-278)||(865228-865306)
[»] chr5 (2 HSPs)
chr5 (219-277)||(7237070-7237128)
chr5 (202-269)||(41715148-41715216)
[»] chr1 (3 HSPs)
chr1 (202-278)||(7440929-7441006)
chr1 (220-278)||(6397661-6397719)
chr1 (201-272)||(28666876-28666945)
[»] chr8 (4 HSPs)
chr8 (201-278)||(14958112-14958190)
chr8 (219-278)||(9293233-9293292)
chr8 (225-272)||(15292567-15292614)
chr8 (225-272)||(15472936-15472983)
[»] chr3 (2 HSPs)
chr3 (201-278)||(8543127-8543207)
chr3 (225-278)||(11630117-11630170)
[»] chr2 (3 HSPs)
chr2 (230-278)||(31395170-31395218)
chr2 (225-278)||(13486134-13486186)
chr2 (202-278)||(38288428-38288502)
[»] chr6 (1 HSPs)
chr6 (219-278)||(33908581-33908640)
[»] scaffold0035 (1 HSPs)
scaffold0035 (219-261)||(24525-24567)
[»] chr7 (1 HSPs)
chr7 (226-263)||(15077119-15077156)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 3283892 - 3284186
Alignment:
Q  3 tgtatgtatatacgactcaaaagattagttgattagtcaaatggactcacatctttacaattggaaggaaacgtaaattttatttgaagtttgaacaaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3283892 tgtatgtatatacgactcaaaagattagttgattagtcaaagggactcacatctttacaattggaaggaaacgtaaattttatttgaagtttgaacaaca 3283991  T
Q  103 aaaatgttgtccattttgttnnnnnnnnnngttgtccaatacaataaattttggatatgttagannnnnnnnnnctccctcaatcacatcaatgatgttt 202  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||    
T  3283992 aaaatgttgtccattttgttcaaaaaaaaagttgtccaatacaataaattttggatatgttagatttttttttt-tccctcaatcacatcaatgatgttt 3284090  T
Q  203 gttagaacaacaatactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaaaagatttcggcctatctctg 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3284091 gttagaacaacaatactaacataagattaaataaaagaccgaaagtaaaagacaatgaacatacgatatttgttaaaagatttcggcctatctctg 3284186  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 3267984 - 3268056
Alignment:
Q  22 aaagattagttgattagtcaaatggactcacatctttacaattggaaggaaacgtaaattttatttgaagttt 94  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  3267984 aaagattagctgattagtcaaagggactcacatctttacaattggaaacaaacataaattttatttgaagttt 3268056  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 865228 - 865306
Alignment:
Q  201 ttgttagaacaacaat-actaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    |||||| ||||||||| | ||||| || ||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  865228 ttgttacaacaacaatcagtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaa 865306  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 7237070 - 7237128
Alignment:
Q  219 taacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgtta 277  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  7237070 taacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgtta 7237128  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 41715216 - 41715148
Alignment:
Q  202 tgttagaacaacaa-tactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgat 269  Q
    |||||| ||||||| || ||||| |||||||||||||||| ||||||  ||||||||| ||||||||||    
T  41715216 tgttagcacaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgat 41715148  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 7441006 - 7440929
Alignment:
Q  202 tgttagaacaacaa-tactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    |||||||||||||  || |||||||||||||||||||||| ||||||||||| |||||  | ||||||||||||||||    
T  7441006 tgttagaacaacatctagtaacataagattaaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaa 7440929  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 6397661 - 6397719
Alignment:
Q  220 aacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    ||||||||||||||||||||| | ||||||||| |||| |||||||| |||||||||||    
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaa 6397719  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 28666945 - 28666876
Alignment:
Q  201 ttgttagaacaacaatactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatt 272  Q
    |||||||||||||  || ||||| |||||||||||||||| ||||||  |||||||||||||  ||||||||    
T  28666945 ttgttagaacaac--tagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcacgatatt 28666876  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 14958190 - 14958112
Alignment:
Q  201 ttgttagaacaacaa-tactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    ||||||||||||||| || ||||| ||||||||| |||||| ||||||   ||||||||||||||| ||||||||||||    
T  14958190 ttgttagaacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaa 14958112  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 9293233 - 9293292
Alignment:
Q  219 taacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    ||||| |||||||||||||||| | ||||  |||||||||||||| || |||||||||||    
T  9293233 taacaaaagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaa 9293292  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 15292567 - 15292614
Alignment:
Q  225 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatt 272  Q
    |||||||||||||||| ||||||||||||  |||||||| ||||||||    
T  15292567 aagattaaataagagaacgaaagtaaaagttaatgaacacacgatatt 15292614  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 15472936 - 15472983
Alignment:
Q  225 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatt 272  Q
    |||||||||||||||| ||||||||||||  |||||||| ||||||||    
T  15472936 aagattaaataagagaacgaaagtaaaagttaatgaacacacgatatt 15472983  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 8543207 - 8543127
Alignment:
Q  201 ttgttagaacaacaa--tactaacataagattaaataagagaccgaaagta-aaagacaatgaacatacgatatttgttaa 278  Q
    |||||||||||||||  || ||||| |||||||||||||||| ||||   | |||||||||||||||||||||||||||||    
T  8543207 ttgttagaacaacaacatattaacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaa 8543127  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 11630170 - 11630117
Alignment:
Q  225 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    |||||||||||||||| | |||| |||||||||||| |||||||||||||||||    
T  11630170 aagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaa 11630117  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 31395170 - 31395218
Alignment:
Q  230 taaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    ||||||||| | |||||||||||||||||||||| | ||||||||||||    
T  31395170 taaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaa 31395218  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 13486134 - 13486186
Alignment:
Q  225 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    |||||||||||||||| |||||| |||| ||||||||||||| |||||| ||||    
T  13486134 aagattaaataagagaacgaaag-aaaaaacaatgaacatacaatattttttaa 13486186  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 38288428 - 38288502
Alignment:
Q  202 tgttagaacaacaatactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    ||||||||||||  || ||||| ||||||||||||||||  |||||  ||||||||| |||| | ||||||||||||    
T  38288428 tgttagaacaac--tagtaacaaaagattaaataagagattgaaagagaaagacaattaacacatgatatttgttaa 38288502  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 33908581 - 33908640
Alignment:
Q  219 taacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 278  Q
    ||||| || ||||||||||||| ||||||  |||||||||||||| | ||||||||||||    
T  33908581 taacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaa 33908640  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 24567 - 24525
Alignment:
Q  219 taacataagattaaataagagaccgaaagtaaaagacaatgaa 261  Q
    ||||| |||||||||||||||| | ||||||||||||||||||    
T  24567 taacagaagattaaataagagaacaaaagtaaaagacaatgaa 24525  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 15077119 - 15077156
Alignment:
Q  226 agattaaataagagaccgaaagtaaaagacaatgaaca 263  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  15077119 agattaaataagagaacgaaagtaaaaaacaatgaaca 15077156  T

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