View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_105 (Length: 296)
Name: NF20151_low_105
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 9973515 - 9973657
Alignment:
| Q |
36 |
gagacacaaaagctcaagtggaatacacatcacaagtaaaaaacaatataaaagtggcttggttcatattttagatggtcatcaatttggttgaaaatga |
135 |
Q |
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| T |
9973515 |
gagacacaaaagctcaagtggaatacacatcaaaagtaaaaaacaatataaaagtggcttggttcatattttagatggtcatcaatttggttgaaaatga |
9973614 |
T |
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| Q |
136 |
aagaaaaatatttatatttcaatccttttgaaaaaccatgatt |
178 |
Q |
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| T |
9973615 |
aagaaaaatatttatatttcaatccttttgaaaaaccatgatt |
9973657 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 9973690 - 9973780
Alignment:
| Q |
190 |
acaatggacccgttacaactctttaaatagtgtcttttgattcatgcttgcttttgataacacgattatttacttattttatagcataatt |
280 |
Q |
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| T |
9973690 |
acaatggacccgttacaactctttaaatagtgtcttttgattcatgcttgcttttgataagacgattatttacttattgtatagcataatt |
9973780 |
T |
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