View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_107 (Length: 293)
Name: NF20151_low_107
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 30543322 - 30543582
Alignment:
| Q |
18 |
ctctccaactgctttgatgaaaccatcttacaattttgtctaaatacatgcctatgcagaaatttagatgaattgagtcttgaagtctcaccgaaattca |
117 |
Q |
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| T |
30543322 |
ctctccaactgctttgatgaaatcatcttacaattttgactaaatacatgcctatgcagaaatttaggtgaattgagtctcgaagtctcaccaaaattca |
30543421 |
T |
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| Q |
118 |
taaaacacttacaaagatacttatatattactatttatcaacaaagttcttatgcaattgagctgaattcacacatttataggatatgatgataaccaaa |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30543422 |
taaaacgcttacaaagatacttatatattactatttgtcaacaaagttcttatgcaattgagctgaattcacacatttatagggtatgatgataaccaaa |
30543521 |
T |
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| Q |
218 |
cttttttatcaaatgaaccaacctcaaaatgaagcaatcacatgggagttttttcccttag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30543522 |
tttttttatcaaatgaaccaacctcaaaatgaagcaatcacatgggagttttttcccttag |
30543582 |
T |
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