View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_117 (Length: 281)

Name: NF20151_low_117
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_117
NF20151_low_117
[»] chr1 (21 HSPs)
chr1 (1-270)||(44454091-44454363)
chr1 (1-67)||(9474798-9474864)
chr1 (1-69)||(32813359-32813427)
chr1 (1-49)||(41758917-41758965)
chr1 (6-67)||(8346309-8346370)
chr1 (1-50)||(45044499-45044548)
chr1 (1-50)||(50630570-50630619)
chr1 (1-49)||(27564675-27564723)
chr1 (1-49)||(37649310-37649358)
chr1 (1-49)||(38632261-38632309)
chr1 (1-49)||(48716222-48716270)
chr1 (1-71)||(49811445-49811515)
chr1 (1-69)||(11152298-11152366)
chr1 (1-49)||(26274541-26274589)
chr1 (1-69)||(50590920-50590988)
chr1 (1-69)||(51898603-51898671)
chr1 (1-67)||(2582027-2582093)
chr1 (1-67)||(47452242-47452308)
chr1 (1-50)||(37926377-37926426)
chr1 (1-41)||(5958948-5958988)
chr1 (1-69)||(41608413-41608481)
[»] chr8 (21 HSPs)
chr8 (1-69)||(42354508-42354576)
chr8 (1-67)||(12831159-12831225)
chr8 (1-51)||(44507025-44507075)
chr8 (1-49)||(504061-504109)
chr8 (1-69)||(4854783-4854851)
chr8 (1-69)||(5957942-5958010)
chr8 (3-49)||(23122537-23122583)
chr8 (1-69)||(8841352-8841420)
chr8 (1-49)||(34012236-34012284)
chr8 (1-49)||(9122297-9122345)
chr8 (1-69)||(10284551-10284619)
chr8 (1-49)||(14548034-14548082)
chr8 (1-49)||(15048121-15048169)
chr8 (1-69)||(37038591-37038659)
chr8 (1-49)||(42710234-42710282)
chr8 (1-69)||(43414501-43414569)
chr8 (1-49)||(1179880-1179928)
chr8 (1-41)||(16056349-16056389)
chr8 (1-41)||(24307741-24307781)
chr8 (1-41)||(32707951-32707991)
chr8 (1-49)||(40423883-40423931)
[»] chr7 (24 HSPs)
chr7 (1-69)||(35522988-35523056)
chr7 (1-60)||(35137645-35137704)
chr7 (1-49)||(4999454-4999502)
chr7 (1-69)||(41423794-41423862)
chr7 (1-69)||(46033721-46033789)
chr7 (1-50)||(19436126-19436175)
chr7 (1-74)||(35468770-35468843)
chr7 (1-49)||(19329954-19330002)
chr7 (1-69)||(27744229-27744297)
chr7 (1-69)||(31735989-31736057)
chr7 (1-49)||(36362126-36362174)
chr7 (1-41)||(38837329-38837369)
chr7 (1-48)||(32951434-32951481)
chr7 (1-48)||(40957819-40957866)
chr7 (6-69)||(46374744-46374807)
chr7 (1-49)||(8080323-8080371)
chr7 (5-69)||(21234517-21234581)
chr7 (1-49)||(36361865-36361913)
chr7 (3-49)||(3434666-3434712)
chr7 (1-67)||(11044290-11044356)
chr7 (3-69)||(16374744-16374810)
chr7 (1-67)||(38267152-38267218)
chr7 (1-49)||(3784107-3784155)
chr7 (1-41)||(8238325-8238365)
[»] chr6 (13 HSPs)
chr6 (1-69)||(31976360-31976428)
chr6 (1-49)||(11427730-11427778)
chr6 (1-69)||(31952950-31953018)
chr6 (1-67)||(29857939-29858005)
chr6 (1-67)||(22880580-22880646)
chr6 (1-41)||(17598666-17598706)
chr6 (1-41)||(23128075-23128115)
chr6 (1-49)||(32869790-32869838)
chr6 (1-75)||(4231660-4231734)
chr6 (1-71)||(28536406-28536476)
chr6 (1-49)||(946488-946536)
chr6 (1-29)||(6209425-6209453)
chr6 (1-49)||(15832689-15832737)
[»] chr3 (23 HSPs)
chr3 (1-69)||(20764835-20764903)
chr3 (1-69)||(35536738-35536806)
chr3 (1-49)||(33644312-33644360)
chr3 (1-69)||(8076505-8076573)
chr3 (1-49)||(11347862-11347910)
chr3 (1-69)||(30801653-30801721)
chr3 (1-41)||(52629412-52629452)
chr3 (1-71)||(1758377-1758444)
chr3 (1-67)||(17470517-17470583)
chr3 (3-69)||(47531979-47532045)
chr3 (3-49)||(48587041-48587087)
chr3 (3-69)||(51419280-51419346)
chr3 (1-69)||(8956874-8956942)
chr3 (1-49)||(11095307-11095355)
chr3 (1-69)||(14623759-14623827)
chr3 (1-49)||(53982123-53982171)
chr3 (3-50)||(35093699-35093746)
chr3 (1-67)||(9563111-9563177)
chr3 (1-67)||(27714825-27714891)
chr3 (1-67)||(31456801-31456867)
chr3 (1-71)||(43746451-43746521)
chr3 (1-41)||(36331277-36331317)
chr3 (1-41)||(54868843-54868883)
[»] chr5 (18 HSPs)
chr5 (1-69)||(15409530-15409598)
chr5 (2-49)||(2740387-2740434)
chr5 (1-50)||(13811764-13811813)
chr5 (1-69)||(2177476-2177544)
chr5 (1-69)||(31009100-31009168)
chr5 (1-49)||(33149578-33149626)
chr5 (1-69)||(33825244-33825312)
chr5 (1-50)||(26720628-26720677)
chr5 (1-50)||(26990377-26990426)
chr5 (1-69)||(6679810-6679878)
chr5 (1-69)||(9603925-9603993)
chr5 (1-49)||(14831926-14831974)
chr5 (1-49)||(18520824-18520872)
chr5 (1-41)||(35785311-35785351)
chr5 (1-49)||(36732882-36732930)
chr5 (1-72)||(35943809-35943880)
chr5 (3-67)||(31132448-31132512)
chr5 (1-49)||(40145519-40145567)
[»] chr4 (17 HSPs)
chr4 (1-49)||(6034156-6034204)
chr4 (1-69)||(31910304-31910372)
chr4 (1-69)||(41823994-41824062)
chr4 (1-49)||(41236459-41236507)
chr4 (1-41)||(42044315-42044355)
chr4 (1-49)||(48182989-48183037)
chr4 (1-74)||(40574891-40574964)
chr4 (1-69)||(29239998-29240066)
chr4 (1-41)||(47986320-47986360)
chr4 (1-69)||(50526091-50526159)
chr4 (1-41)||(480395-480435)
chr4 (1-41)||(19670664-19670704)
chr4 (1-49)||(24995047-24995095)
chr4 (1-41)||(29547907-29547947)
chr4 (1-41)||(50813840-50813880)
chr4 (1-49)||(54473473-54473521)
chr4 (1-41)||(55475303-55475343)
[»] chr2 (21 HSPs)
chr2 (1-69)||(44152039-44152107)
chr2 (1-67)||(32505570-32505636)
chr2 (3-69)||(36168950-36169016)
chr2 (1-49)||(10249322-10249370)
chr2 (1-69)||(20700927-20700995)
chr2 (1-49)||(33436040-33436088)
chr2 (6-49)||(27864808-27864851)
chr2 (1-59)||(9058592-9058650)
chr2 (1-67)||(38882733-38882799)
chr2 (1-71)||(41758699-41758769)
chr2 (1-41)||(4060797-4060837)
chr2 (1-49)||(7465675-7465723)
chr2 (1-49)||(13438455-13438503)
chr2 (1-49)||(17473132-17473180)
chr2 (1-49)||(19930760-19930808)
chr2 (1-49)||(28863567-28863615)
chr2 (3-69)||(38273063-38273128)
chr2 (1-49)||(2533235-2533283)
chr2 (1-49)||(5574440-5574488)
chr2 (1-41)||(30915575-30915615)
chr2 (1-41)||(40701590-40701630)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-67)||(4141-4207)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-69)||(849-917)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-69)||(849-917)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-69)||(8783-8851)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-41)||(10057-10097)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-41)||(152610-152650)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 44454091 - 44454363
Alignment:
Q  1 tcttctctcttcctaatgcatgggat----gtataagggtgtatgagaataaatagtatttatgtaacatttttcaattaagaaacataatcaccgtgca 96  Q
    |||||||||||||||||||||||| |    |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||||| || ||    
T  44454091 tcttctctcttcctaatgcatggggtcagagtataagggtgtataagaataaatggtgtttatgtaacattttccaattaagaaacataatcactgtaca 44454190  T
Q  97 aaaatttaacatgaaaaacacaaaaaccacagggagaaaatcatggttgttgtctaataacatctaaagaagtgaannnnnnnactaacacatagagttc 196  Q
    | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||       || ||||||||||||||    
T  44454191 agaatttaacatgaaaaacataaaaaccacaggaagaaaatcatggttgttgtctaatagcatctaaagaagtgaatttttttac-aacacatagagttc 44454289  T
Q  197 tcttaaacaccaaatactcgatagtacacttgcatgttacacccttcaaaccaaataattaaacgacatttcat 270  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44454290 tcttaaacaccaaatatccgatagtacacttgcatgttacacccttcaaaccaaataattaaacgacatttcat 44454363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9474864 - 9474798
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||| ||||    
T  9474864 tcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaagagtgtctatgtatcatt 9474798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32813359 - 32813427
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||| || | |||||||||||||    
T  32813359 tcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacatttt 32813427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41758917 - 41758965
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  41758917 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 41758965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 8346370 - 8346309
Alignment:
Q  6 tctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||||||||  |||| || ||||||||||||||||| ||||||||||| ||||    
T  8346370 tctcttcctaatgcatggagtgtacaaaggtgtatgagaataaatggtatttatgtatcatt 8346309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45044548 - 45044499
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  45044548 tcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaat 45044499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50630570 - 50630619
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  50630570 tcttctctcttcctaatgcatagggtgtacaagggtgtatgagaataaat 50630619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27564723 - 27564675
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  27564723 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 27564675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37649310 - 37649358
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  37649310 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 37649358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38632309 - 38632261
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  38632309 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 38632261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48716270 - 48716222
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  48716270 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 48716222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49811515 - 49811445
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttc 71  Q
    |||||||||||||||||| ||| | || | |||||||||||||||||||  || | |||||||||||||||    
T  49811515 tcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctatgtaacatttttc 49811445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11152366 - 11152298
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||| | |||||||| |||| |||| ||||||||||||||| || | ||| |||||||||    
T  11152366 tcttctctcttcccagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatataacatttt 11152298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26274541 - 26274589
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| |||| | ||||||||||| |||||||    
T  26274541 tcttctctcttcctaatgcatgagatgcacaagggtgtatgggaataaa 26274589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 50590988 - 50590920
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||||| |||||| |||| |||||||||||  | ||||  |||| |||||||||||||    
T  50590988 tcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtatctatgtaacatttt 50590920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 51898671 - 51898603
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||||||||||   ||||||  || |||||||||||||||    
T  51898671 tcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatttt 51898603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2582027 - 2582093
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||||||| |||| | |||| |||||||||| ||||||||  || |||||||| ||||    
T  2582027 tcttctctcttcctaatacatgaggtgtacaagggtgtattagaataaagggtgtttatgtatcatt 2582093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 47452308 - 47452242
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||||| |||||||| |||| |||| |||||| ||||||| ||| | |||||| ||||    
T  47452308 tcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaagagtgtctatgtatcatt 47452242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37926426 - 37926377
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    |||||||||||||||||| ||||| |||| |||| |||||| ||||||||    
T  37926426 tcttctctcttcctaatgtatggggtgtacaaggatgtatgtgaataaat 37926377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5958988 - 5958948
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  5958988 tcttctctcttcctaatacatggggtgtacaagggtgtatg 5958948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41608481 - 41608413
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||||| ||| || |||| |||||||||||  | ||||  || |||||||||||||||    
T  41608481 tcttctctcttcctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtttatgtaacatttt 41608413  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42354576 - 42354508
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||||| || | |||||||||||||    
T  42354576 tcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacatttt 42354508  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12831159 - 12831225
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| || | |||||| ||||    
T  12831159 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcatt 12831225  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44507075 - 44507025
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaata 51  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  44507075 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaata 44507025  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 504109 - 504061
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  504109 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 504061  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4854851 - 4854783
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||| |||||| |||||||||| |||||| |||||||||||| ||| | |||||||||||||    
T  4854851 tcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctatgtaacatttt 4854783  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5957942 - 5958010
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||| | |||| |||||||||||||||||||  || |||||||||||||||    
T  5957942 tcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggtgtttatgtaacatttt 5958010  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 23122583 - 23122537
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  23122583 ttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 23122537  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8841420 - 8841352
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||| |||||| |||||||| |||| ||| |||||||||||||||| || | |||||||||||||    
T  8841420 tcttctcttttcctagtgcatggggtgtacaagagtgtatgagaataaatggtgtctatgtaacatttt 8841352  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34012284 - 34012236
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  34012284 tcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaa 34012236  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9122297 - 9122345
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||| ||||||| |||||||    
T  9122297 tcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaa 9122345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10284619 - 10284551
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| |||| ||||| ||||||||  || | |||||||||||||    
T  10284619 tcttctctcttcctagtgcatggggtgtacaaggttgtataagaataaaaggtgtctatgtaacatttt 10284551  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14548034 - 14548082
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||| |||||| |||||||    
T  14548034 tcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaa 14548082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15048169 - 15048121
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||| |||||||||| ||||||||||  |||||||    
T  15048169 tcttctctcttcctaatgtatgggatgtacaagggtgtatcggaataaa 15048121  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37038591 - 37038659
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||||||||||   ||||||  || |||||||||||||||    
T  37038591 tcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatttt 37038659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42710282 - 42710234
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||    
T  42710282 tcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaa 42710234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 43414569 - 43414501
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| |||||||||||  ||||||  || | |||||||||||||    
T  43414569 tcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaagggtgtctatgtaacatttt 43414501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1179928 - 1179880
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||| | |||| |||||||    
T  1179928 tcttctctcttcctaatgcatggggtgtacaaggatatatgggaataaa 1179880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16056389 - 16056349
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  16056389 tcttctctcttcctaatacatggggtgtacaagggtgtatg 16056349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24307781 - 24307741
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  24307781 tcttctctcttcctaatacatggggtgtacaagggtgtatg 24307741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32707991 - 32707951
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  32707991 tcttctctcttcctaatacatggggtgtacaagggtgtatg 32707951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40423931 - 40423883
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    ||||||||||||||||| |||| | |||| ||||||||||| |||||||    
T  40423931 tcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaa 40423883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35522988 - 35523056
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||| || |||||||||||||||    
T  35522988 tcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtttatgtaacatttt 35523056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35137645 - 35137704
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatg 60  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||    
T  35137645 tcttctctcttcctaatgcatgggatgtacaagggtgtatgagaacaaatggtatctatg 35137704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4999502 - 4999454
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  4999502 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 4999454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41423794 - 41423862
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| || ||||||||||||||||  || |||||||||||||||    
T  41423794 tcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtttatgtaacatttt 41423862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46033789 - 46033721
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||| ||||||||| ||||| |||| |||||||||||||||||||| || | |||||||||||||    
T  46033789 tcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacatttt 46033721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19436175 - 19436126
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  19436175 tcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaat 19436126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35468843 - 35468770
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttcaat 74  Q
    ||||||||||||||| | |||| ||||||||||| ||||||||||||||  || | ||||||||||||| ||||    
T  35468843 tcttctctcttcctagttcatgagatgtataaggatgtatgagaataaaaggtgtatatgtaacattttccaat 35468770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19329954 - 19330002
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  19329954 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 19330002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27744297 - 27744229
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| ||||||||||||| |||| | |||| |||||||| || ||||| |||||||||    
T  27744297 tcttctctcttcctagtgcatgggatgtacaaggatatatgggaataaatggtgtttatataacatttt 27744229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31735989 - 31736057
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||  |||| ||| |||||||||    
T  31735989 tcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaaaggtatctatctaacatttt 31736057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36362126 - 36362174
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  36362126 tcttttctcttcctaatacatgggatgtacaagggtgtatgagaataaa 36362174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38837329 - 38837369
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38837329 tcttctctcttcctaatgcatgggatgtacaagggtgtatg 38837369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32951481 - 32951434
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataa 48  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  32951481 tcttctctcttcctaatacatggggtgtacaagggtgtatgagaataa 32951434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40957819 - 40957866
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataa 48  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||    
T  40957819 tcttctctcttcctaatgcatggggtgtacaagggtgtatgaaaataa 40957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 46374807 - 46374744
Alignment:
Q  6 tctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||||| || | |||||||||||||    
T  46374807 tctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacatttt 46374744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8080371 - 8080323
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    ||||||||||||||| |||||||| |||| ||||||||||| |||||||    
T  8080371 tcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaa 8080323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 21234517 - 21234581
Alignment:
Q  5 ctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||| ||||| |||| || ||||||||||||||||  || | |||||||||||||    
T  21234517 ctctcttcctaatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacatttt 21234581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36361913 - 36361865
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||| |||||||||||| ||||| ||||| |||||||||||||||||||    
T  36361913 tcttttctcttcctaatacatggaatgtacaagggtgtatgagaataaa 36361865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 3434666 - 3434712
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| |||| |||| |||||| |||||||    
T  3434666 ttctctcttcctaatgcatggggtgtacaaggctgtatgggaataaa 3434712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11044290 - 11044356
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||||||||||||| | |||| || ||||||||| |||||| ||| | |||||| ||||    
T  11044290 tcttctctcttcctaatgcatgaggtgtacaaaggtgtatgaaaataaagagtgtctatgtatcatt 11044356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16374810 - 16374744
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||| ||||  |||| || ||||||||||||||||  || | |||||||||||||    
T  16374810 ttctctcttcctaatgtatggagtgtacaaaggtgtatgagaataaagggtgtctatgtaacatttt 16374744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38267152 - 38267218
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||||||||||||||||||||  | ||||||||  |||||||  ||| |||||| ||||    
T  38267152 tcttctctcttcctaatgcatgggatgtacgaaggtgtatggaaataaatgatatctatgtatcatt 38267218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3784107 - 3784155
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||  |||||| |||||||    
T  3784107 tcttctctcttcctaatgcatggggtgtacaagaatgtatgtgaataaa 3784155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8238325 - 8238365
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  8238325 tcttctctcttcctaatacatggggtgtacaagggtgtatg 8238365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31976360 - 31976428
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||| || | |||||||||||||    
T  31976360 tcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacatttt 31976428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11427730 - 11427778
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  11427730 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 11427778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31953018 - 31952950
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| |||| ||||||||||||||| || | |||||||||||||    
T  31953018 tcttctctcttcctagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatgtaacatttt 31952950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29857939 - 29858005
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||| || | |||||| ||||    
T  29857939 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 29858005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22880646 - 22880580
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||||||| |||||| |||| ||||||||||| |||||||| || | |||||| ||||    
T  22880646 tcttctctcttcctaatacatggggtgtacaagggtgtatgggaataaatggtgtatatgtatcatt 22880580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17598666 - 17598706
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  17598666 tcttctctcttcctaatgcatggggtgtacaagggtgtatg 17598706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23128115 - 23128075
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  23128115 tcttttctcttcctaatgcatgggatgtacaagggtgtatg 23128075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32869790 - 32869838
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||| |||||| |||||||    
T  32869790 tcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaa 32869838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4231660 - 4231734
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttcaatt 75  Q
    ||||||||||||||||| |||||| |||| |||||||||||  | ||||  || | ||||||||||||| |||||    
T  4231660 tcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccaatt 4231734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28536476 - 28536406
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttc 71  Q
    ||||| ||||||||| |||||||| |||| |||||||||||| |||||||  | |  ||||||||||||||    
T  28536476 tcttccctcttcctactgcatggggtgtacaagggtgtatgaaaataaatgatgtcgatgtaacatttttc 28536406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 946488 - 946536
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| |||||| |||  ||||||| ||||||    
T  946488 tcttctctcttcctaatgcatgagatgtacaagaatgtatgacaataaa 946536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6209453 - 6209425
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgta 29  Q
    |||||||||||||||||||||||||||||    
T  6209453 tcttctctcttcctaatgcatgggatgta 6209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15832689 - 15832737
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||| ||||||||||||||||| |||| ||||||||||  |||||||    
T  15832689 tcttctatcttcctaatgcatggggtgtacaagggtgtattggaataaa 15832737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20764903 - 20764835
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||| || | |||||||||||||    
T  20764903 tcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacatttt 20764835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35536738 - 35536806
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||||| || | |||||||||||||    
T  35536738 tcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacatttt 35536806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33644312 - 33644360
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||    
T  33644312 tcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaa 33644360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8076505 - 8076573
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||  |||||||||||||||| || | |||||||||||||    
T  8076505 tcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacatttt 8076573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11347910 - 11347862
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  11347910 tcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaa 11347862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30801721 - 30801653
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| | |||||| |||| |||||||||||||||||||  || | |||||||||||||    
T  30801721 tcttctctcttcctagtacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatttt 30801653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52629412 - 52629452
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  52629412 tcttctctcttcctaatgcatgggatgtacaagggtgtatg 52629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1758444 - 1758377
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttc 71  Q
    |||||||||||||||||||||||| |||| || |||||||  ||||||| ||| |||||||||||||||||    
T  1758444 tcttctctcttcctaatgcatggg-tgtacaaaggtgtat--gaataaacagtgtttatgtaacatttttc 1758377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17470517 - 17470583
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||| || | |||||| ||||    
T  17470517 tcttctctcttcctaatgcatgggatgtacaaatatgtatgagaataaatggtgtctatgtatcatt 17470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 47531979 - 47532045
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||| |||| ||||| ||| ||||||| |||||||  || |||||||||||||||    
T  47531979 ttctctcttcctaatgtatggaatgtacaagtgtgtatgggaataaagggtgtttatgtaacatttt 47532045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 48587087 - 48587041
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||    
T  48587087 ttctctcttcctaatgcatgggatgtacaagggtatatgggaataaa 48587041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 51419346 - 51419280
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||| ||||| |||| |||||||||||  ||||||  || |||||||||||||||    
T  51419346 ttctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacatttt 51419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8956874 - 8956942
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| ||||  || |||| ||||||||||||||||||||  | | |||||||||||||    
T  8956874 tcttctctcttcctagtgcacagggtgtagaagggtgtatgagaataaatgctgtctatgtaacatttt 8956942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11095355 - 11095307
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||| |||||||||||||||| || |||| |||||||||||||||||||    
T  11095355 tcttttctcttcctaatgcatcgggtgtacaagggtgtatgagaataaa 11095307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14623827 - 14623759
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||| ||| |||||| | |||| |||| ||||||||||||||| || | |||||||||||||    
T  14623827 tcttctctctttctagtgcatgaggtgtagaaggatgtatgagaataaatggtgtctatgtaacatttt 14623759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53982123 - 53982171
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||| |||||| |||||||    
T  53982123 tcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaa 53982171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 35093699 - 35093746
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    ||||||||||||| |||||| |||||| || |||||||||||||||||    
T  35093699 ttctctcttcctagtgcatgagatgtacaaaggtgtatgagaataaat 35093746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9563111 - 9563177
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||||||||||||| | |||| || |||||||| |||||||  |||| |||||| ||||    
T  9563111 tcttctctcttcctaatgcatgagttgtacaaaggtgtatgggaataaagggtatctatgtatcatt 9563177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27714891 - 27714825
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||||||| ||| |||||| |||| ||||||||| ||||||||| ||| | |||||| ||||    
T  27714891 tcttctctcttcccaatacatggggtgtacaagggtgtacgagaataaagagtgtatatgtatcatt 27714825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31456801 - 31456867
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||| ||||||||||||||||||| |||| ||||||| ||| |||||||  || |||||||| ||||    
T  31456801 tcttttctcttcctaatgcatggggtgtacaagggtgcatgggaataaagggtgtttatgtatcatt 31456867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43746451 - 43746521
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttc 71  Q
    |||||| |||||||| |||||| | |||| |||||||||||| || |||  || |||||||||||||||||    
T  43746451 tcttctttcttcctagtgcatgaggtgtacaagggtgtatgacaacaaagggtgtttatgtaacatttttc 43746521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36331317 - 36331277
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  36331317 tcttctctcttcctaatacatggggtgtacaagggtgtatg 36331277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 54868883 - 54868843
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  54868883 tcttctctcttcctaatgcatagggtgtacaagggtgtatg 54868843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15409598 - 15409530
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||||  || |||||||||||||||    
T  15409598 tcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacatttt 15409530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 2740387 - 2740434
Alignment:
Q  2 cttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  2740387 cttctctcttcctaatgcatgggatgtacaagggtgtatgggaataaa 2740434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13811764 - 13811813
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  13811764 tcttctctcttcctaatgcatgggatgtacaaggatgtatgggaataaat 13811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2177476 - 2177544
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||  || | | |||||||||||    
T  2177476 tcttctctcttcctagtgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 2177544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31009100 - 31009168
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| || ||||||||||||||||  || | |||||||||||||    
T  31009100 tcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacatttt 31009168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33149626 - 33149578
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  33149626 tcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaa 33149578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33825312 - 33825244
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| |||| ||||||||||||||| || |  ||||||||||||    
T  33825312 tcttctctcttcctagtgcatggggtgtagaaggctgtatgagaataaatggtgtcaatgtaacatttt 33825244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26720628 - 26720677
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||    
T  26720628 tcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaat 26720677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26990377 - 26990426
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaat 50  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||    
T  26990377 tcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaat 26990426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6679810 - 6679878
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| || || |||| |||||||||||| |||||||  | | |||||||||||||    
T  6679810 tcttctctcttcctaatgtatagggtgtacaagggtgtatgacaataaatgatgtctatgtaacatttt 6679878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9603925 - 9603993
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||| || ||| ||||||||| || ||||||||||||||||| || | || ||||||||||    
T  9603925 tcttctctcttcttagtgcttgggatgtacaaaggtgtatgagaataaatggtgtctacgtaacatttt 9603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14831926 - 14831974
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||| |||||| |||||||    
T  14831926 tcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaa 14831974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18520872 - 18520824
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| |||||||||||| ||||||    
T  18520872 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaa 18520824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35785311 - 35785351
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  35785311 tcttctctcttcctaatgcatggggtgtacaagggtgtatg 35785351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36732930 - 36732882
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  36732930 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 36732882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35943880 - 35943809
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttca 72  Q
    |||| |||||||||| |||||||| |||| |||||||||||  ||||||  || | ||||||||||||||||    
T  35943880 tcttttctcttcctagtgcatggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatttttca 35943809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 31132448 - 31132512
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    ||||||||| |||||||||| | |||| |||||||||||| ||||||  || |||||||| ||||    
T  31132448 ttctctctttctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtttatgtatcatt 31132512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40145519 - 40145567
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||| | | |||| |||||| ||||||||||||    
T  40145519 tcttctctcttcctaatgcacgaggtgtacaagggtatatgagaataaa 40145567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6034156 - 6034204
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  6034156 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 6034204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31910304 - 31910372
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||| |||||||||| ||| ||||||| |||||||| || | |||||||||||||    
T  31910304 tcttctctcttcctaatgtatgggatgtacaagagtgtatgggaataaatggtgtctatgtaacatttt 31910372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41823994 - 41824062
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||||||| | |||| || ||||||||||||||||| || | |||||||||||||    
T  41823994 tcttctctcttcctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctatgtaacatttt 41824062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41236459 - 41236507
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  41236459 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 41236507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42044355 - 42044315
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  42044355 tcttctctcttcctaatgcatgggatgtacaagggtgtatg 42044315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48183037 - 48182989
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  48183037 tcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaa 48182989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40574891 - 40574964
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttcaat 74  Q
    |||||||||||||||||  ||||| |||| |||||||||||||||||||  || | ||| ||||||||| ||||    
T  40574891 tcttctctcttcctaatatatggggtgtacaagggtgtatgagaataaaaggtgtctatctaacattttacaat 40574964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29239998 - 29240066
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||| ||||||| |||||||  || | |||||||||||||    
T  29239998 tcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctatgtaacatttt 29240066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47986320 - 47986360
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  47986320 tcttctctcttcctaatacatgggatgtacaagggtgtatg 47986360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 50526159 - 50526091
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||||||||||   ||||||  || |||||||||||||||    
T  50526159 tcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatttt 50526091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 480435 - 480395
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  480435 tcttctctcttcctaatgcatggggtgtacaaaggtgtatg 480395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19670704 - 19670664
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  19670704 tcttctctcttcctaatacatggggtgtacaagggtgtatg 19670664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24995095 - 24995047
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||| ||||||||||| |||| || |||||||| |||||||    
T  24995095 tcttctctcttcttaatgcatggggtgtacaatggtgtatgggaataaa 24995047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29547947 - 29547907
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  29547947 tcttctctcttcctaatacatggggtgtacaagggtgtatg 29547907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50813880 - 50813840
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||| |||||| |||||||||||    
T  50813880 tcttctctcttcctaatacatgagatgtacaagggtgtatg 50813840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54473521 - 54473473
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    ||||||||||||||||| |||||  |||| ||||||||||| |||||||    
T  54473521 tcttctctcttcctaatacatggagtgtacaagggtgtatgggaataaa 54473473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55475303 - 55475343
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  55475303 tcttctctcttcctaatacatggggtgtacaagggtgtatg 55475343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44152039 - 44152107
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||||||| ||| || ||||||||||| |||||||  || |||||||||||||||    
T  44152039 tcttctctcttcctaatgcatgagatatacaagggtgtatgcgaataaaaggtgtttatgtaacatttt 44152107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32505636 - 32505570
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||||| ||| | |||||| ||||    
T  32505636 tcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagagtgtctatgtatcatt 32505570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 36168950 - 36169016
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||| ||||| |||| ||| |||||||||||||||  || |||||||||||||||    
T  36168950 ttctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggtgtttatgtaacatttt 36169016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10249370 - 10249322
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  10249370 tcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 10249322  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20700927 - 20700995
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||||||||||| |||||||  || | |||||||||||||    
T  20700927 tcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacatttt 20700995  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33436088 - 33436040
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||    
T  33436088 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaa 33436040  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 27864808 - 27864851
Alignment:
Q  6 tctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  27864808 tctcttcctaatacatgggatgtacaagggtgtatgagaataaa 27864851  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9058592 - 9058650
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttat 59  Q
    |||||||||||||||||||||||| |||| ||| ||||||| |||||||  ||||||||    
T  9058592 tcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagggtatttat 9058650  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38882799 - 38882733
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||| ||||||||||||||||||| |||| ||||||||||| |||||||| || | |||||| ||||    
T  38882799 tcttatctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtctctatgtatcatt 38882733  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41758699 - 41758769
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttttc 71  Q
    |||||||||||||||||  ||||| |||| |||| ||||||||||||||  || | |||||||||||||||    
T  41758699 tcttctctcttcctaatatatggggtgtacaaggatgtatgagaataaaatgtgtctatgtaacatttttc 41758769  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4060797 - 4060837
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  4060797 tcttctctcttcctaatgcatggggtgtacaagggtgtatg 4060837  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7465723 - 7465675
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  7465723 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 7465675  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13438455 - 13438503
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||||| |||| |||| |||||| |||||||    
T  13438455 tcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaa 13438503  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17473132 - 17473180
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  17473132 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 17473180  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19930808 - 19930760
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  19930808 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 19930760  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28863567 - 28863615
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  28863567 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 28863615  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 38273128 - 38273063
Alignment:
Q  3 ttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||| ||||| |||| |||  ||||||||||||||| || ||||||||| |||||    
T  38273128 ttctctcttcctaatgtatggggtgtacaaga-tgtatgagaataaatggtgtttatgtaatatttt 38273063  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2533235 - 2533283
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    ||||||||||||| |||| ||||| |||| ||||||||||| |||||||    
T  2533235 tcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaa 2533283  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5574488 - 5574440
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaa 49  Q
    |||| ||||||||||||||||||  |||| ||||||||||| |||||||    
T  5574488 tcttttctcttcctaatgcatggcgtgtacaagggtgtatgggaataaa 5574440  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30915575 - 30915615
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  30915575 tcttctctcttcctaatacatggggtgtacaagggtgtatg 30915615  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40701590 - 40701630
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  40701590 tcttctctcttcctaatgcatcgggtgtacaagggtgtatg 40701630  T

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Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4141 - 4207
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatt 67  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||| || | |||||| ||||    
T  4141 tcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 4207  T

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Target: scaffold1268 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 917 - 849
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||| ||||||| |||||||  || |||||||||||||||    
T  917 tcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacatttt 849  T

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Target: scaffold1267 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 917 - 849
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    ||||||||||||||| |||||||| |||| ||| ||||||| |||||||  || |||||||||||||||    
T  917 tcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacatttt 849  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8851 - 8783
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatgagaataaatagtatttatgtaacatttt 69  Q
    |||||||||||||||||  ||||| |||| |||||||||| ||||||||  || | |||||||||||||    
T  8851 tcttctctcttcctaatatatggggtgtacaagggtgtataagaataaaaggtgtctatgtaacatttt 8783  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10097 - 10057
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  10097 tcttctctcttcctaatgcatagggtgtacaagggtgtatg 10057  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 152610 - 152650
Alignment:
Q  1 tcttctctcttcctaatgcatgggatgtataagggtgtatg 41  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  152610 tcttctctctttctaatacatgggatgtacaagggtgtatg 152650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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