View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_12 (Length: 582)

Name: NF20151_low_12
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_12
NF20151_low_12
[»] chr7 (25 HSPs)
chr7 (107-564)||(25783718-25784186)
chr7 (432-564)||(30712835-30712967)
chr7 (417-564)||(39973409-39973556)
chr7 (417-564)||(47247658-47247805)
chr7 (410-564)||(46271718-46271872)
chr7 (417-564)||(20219283-20219430)
chr7 (427-556)||(31188202-31188331)
chr7 (179-397)||(47247387-47247600)
chr7 (179-397)||(30713040-30713253)
chr7 (448-566)||(28244420-28244538)
chr7 (105-397)||(39973062-39973351)
chr7 (417-562)||(20216325-20216470)
chr7 (103-342)||(20221144-20221398)
chr7 (180-342)||(46271977-46272134)
chr7 (176-222)||(17275268-17275314)
chr7 (437-563)||(26630453-26630579)
chr7 (103-189)||(30713274-30713360)
chr7 (246-342)||(20216583-20216679)
chr7 (103-189)||(46272145-46272231)
chr7 (49-96)||(25784984-25785031)
chr7 (103-189)||(17275332-17275418)
chr7 (44-90)||(5277646-5277692)
chr7 (44-77)||(1870954-1870987)
chr7 (44-93)||(21849276-21849325)
chr7 (44-93)||(34826592-34826641)
[»] scaffold0009 (3 HSPs)
scaffold0009 (417-560)||(235347-235490)
scaffold0009 (179-411)||(235076-235303)
scaffold0009 (103-189)||(234969-235055)
[»] chr2 (14 HSPs)
chr2 (417-567)||(3408400-3408550)
chr2 (417-564)||(21639190-21639334)
chr2 (245-411)||(21638980-21639146)
chr2 (179-397)||(3408608-3408821)
chr2 (441-553)||(32467216-32467328)
chr2 (441-542)||(15342994-15343095)
chr2 (103-189)||(3408831-3408917)
chr2 (44-93)||(5192241-5192290)
chr2 (44-93)||(41766811-41766860)
chr2 (97-189)||(21638861-21638953)
chr2 (44-93)||(6197164-6197213)
chr2 (44-93)||(9437080-9437129)
chr2 (44-93)||(12565877-12565926)
chr2 (44-93)||(29386928-29386977)
[»] chr8 (29 HSPs)
chr8 (417-564)||(36831804-36831951)
chr8 (417-567)||(43095522-43095672)
chr8 (176-394)||(36831531-36831744)
chr8 (417-564)||(42277684-42277831)
chr8 (103-342)||(43095173-43095409)
chr8 (432-566)||(14090372-14090506)
chr8 (417-563)||(34662225-34662368)
chr8 (103-389)||(5339306-5339588)
chr8 (289-368)||(42277518-42277597)
chr8 (289-389)||(27470825-27470925)
chr8 (441-544)||(8269110-8269212)
chr8 (435-496)||(27470687-27470748)
chr8 (246-342)||(14090634-14090730)
chr8 (293-342)||(34662481-34662530)
chr8 (179-265)||(34663624-34663710)
chr8 (103-189)||(34663731-34663817)
chr8 (103-189)||(36831405-36831491)
chr8 (473-564)||(5343323-5343414)
chr8 (44-93)||(6655764-6655813)
chr8 (44-93)||(6736166-6736215)
chr8 (417-455)||(5339654-5339692)
chr8 (44-94)||(6745475-6745524)
chr8 (103-189)||(42277327-42277413)
chr8 (44-77)||(2211731-2211764)
chr8 (44-93)||(5728708-5728757)
chr8 (44-93)||(23130129-23130178)
chr8 (44-93)||(39276912-39276961)
chr8 (44-96)||(23769857-23769909)
chr8 (44-96)||(38389460-38389512)
[»] chr3 (26 HSPs)
chr3 (417-564)||(8626575-8626722)
chr3 (417-564)||(39348053-39348200)
chr3 (437-564)||(51897494-51897621)
chr3 (417-563)||(43722357-43722503)
chr3 (436-563)||(42722956-42723083)
chr3 (289-411)||(42722771-42722893)
chr3 (179-395)||(39347782-39347993)
chr3 (441-566)||(27991649-27991774)
chr3 (179-329)||(8626849-8626994)
chr3 (289-396)||(43722191-43722298)
chr3 (297-382)||(51897274-51897359)
chr3 (103-189)||(8627004-8627090)
chr3 (103-189)||(39347675-39347761)
chr3 (442-560)||(23458529-23458647)
chr3 (103-189)||(42722603-42722689)
chr3 (103-189)||(51897077-51897163)
chr3 (176-222)||(43722083-43722130)
chr3 (470-520)||(21565130-21565180)
chr3 (44-98)||(41748904-41748958)
chr3 (103-189)||(43721979-43722065)
chr3 (44-93)||(3106649-3106698)
chr3 (44-93)||(19113641-19113690)
chr3 (44-93)||(26859741-26859790)
chr3 (44-93)||(27659182-27659231)
chr3 (44-93)||(37099828-37099877)
chr3 (44-93)||(42163479-42163528)
[»] chr1 (26 HSPs)
chr1 (417-564)||(10885668-10885815)
chr1 (417-564)||(43628293-43628440)
chr1 (417-541)||(50543565-50543689)
chr1 (417-576)||(35065595-35065753)
chr1 (417-554)||(28793632-28793769)
chr1 (176-397)||(35065321-35065537)
chr1 (179-411)||(28793813-28794040)
chr1 (417-517)||(42097083-42097183)
chr1 (179-368)||(10885397-10885581)
chr1 (417-564)||(32297994-32298148)
chr1 (179-397)||(32298206-32298419)
chr1 (179-342)||(43628553-43628711)
chr1 (179-397)||(50543294-50543507)
chr1 (103-189)||(42098943-42099029)
chr1 (103-189)||(10885294-10885380)
chr1 (103-185)||(26115933-26116015)
chr1 (103-189)||(32298440-32298526)
chr1 (103-189)||(35065215-35065303)
chr1 (179-222)||(26115876-26115919)
chr1 (176-258)||(42098843-42098925)
chr1 (44-93)||(30022727-30022776)
chr1 (44-93)||(51681273-51681322)
chr1 (44-93)||(14422648-14422697)
chr1 (128-189)||(28794050-28794111)
chr1 (44-93)||(34069652-34069701)
chr1 (44-93)||(47979180-47979229)
[»] chr4 (12 HSPs)
chr4 (417-576)||(30844881-30845040)
chr4 (103-411)||(30845084-30845403)
chr4 (441-553)||(42459128-42459240)
chr4 (447-566)||(901600-901719)
chr4 (447-566)||(4644846-4644965)
chr4 (441-560)||(33319301-33319420)
chr4 (44-98)||(26487815-26487869)
chr4 (44-93)||(16072045-16072094)
chr4 (44-93)||(26903012-26903061)
chr4 (44-93)||(36703833-36703882)
chr4 (44-93)||(42058970-42059019)
chr4 (457-541)||(21118243-21118327)
[»] chr5 (23 HSPs)
chr5 (176-411)||(20828512-20828742)
chr5 (417-564)||(6658676-6658821)
chr5 (417-564)||(10014939-10015086)
chr5 (417-564)||(20828321-20828468)
chr5 (176-411)||(10014665-10014895)
chr5 (417-541)||(38364881-38365005)
chr5 (289-411)||(6658510-6658632)
chr5 (179-397)||(38364610-38364823)
chr5 (441-566)||(17221721-17221846)
chr5 (432-565)||(43453135-43453268)
chr5 (289-389)||(36339702-36339802)
chr5 (179-222)||(6658434-6658477)
chr5 (103-189)||(6658327-6658413)
chr5 (44-93)||(1007602-1007651)
chr5 (44-77)||(7483587-7483620)
chr5 (44-93)||(15716098-15716147)
chr5 (317-398)||(17221920-17222001)
chr5 (44-93)||(20205491-20205540)
chr5 (128-189)||(20828760-20828821)
chr5 (44-93)||(22030442-22030491)
chr5 (44-93)||(31703499-31703548)
chr5 (44-93)||(36177640-36177689)
chr5 (289-402)||(43453336-43453449)
[»] scaffold0481 (1 HSPs)
scaffold0481 (434-566)||(10573-10705)
[»] chr6 (5 HSPs)
chr6 (445-544)||(25062465-25062564)
chr6 (179-261)||(3146917-3146999)
chr6 (103-189)||(3147009-3147095)
chr6 (44-93)||(7268468-7268517)
chr6 (44-93)||(28667447-28667496)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 107 - 564
Target Start/End: Complemental strand, 25784186 - 25783718
Alignment:
Q  107 ccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaatctgtgtgaaaatgatg 206  Q
    ||||| ||||| ||||| || ||||||||| ||||||||||||  ||| ||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  25784186 ccacatgagactggcctgctgtggaagtaccatgtgtacgtggccaggaaggcggcttatggcgaggtatttattaatgttaatctgtgtgaaaatgatg 25784087  T
Q  207 ttgatatttgtgaaacaattgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatttgcagtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  25784086 ttgatatttgtgaaacaattgtcttatgtactgttaaatctgtttgtgaagccatgagtgtaaactaatgtttgggtattgtttttaattatttgcagtg 25783987  T
Q  307 gcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgcacagtggtggcatgacaga 406  Q
    |||||||||||||||||   |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25783986 gcgtggaaaattaaaat---tcagcaacggaaagaagattgaggagatgcatgatgaagaaaccatgcctatcatggctgcacagtggtggcatgacaga 25783890  T
Q  407 ttg--------------caacctcattgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttaggg 492  Q
    |||              |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  25783889 ttgcaggataccagctacaacctcattgaccatcgtcttatttgtgcctttgtggagaggtggcacgaggagaattccagcttccaccttctgtttaggg 25783790  T
Q  493 agatgacagtcacacttgatgatgtagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||    
T  25783789 agatgacagtcacacttgatgatgtggcatgtttgctgcatctccccattgaaggcatactcctgtcccacg 25783718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 432 - 564
Target Start/End: Complemental strand, 30712967 - 30712835
Alignment:
Q  432 atttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgc 531  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| ||||| ||   ||||||||    
T  30712967 atttgtgcctttgtggataggtggcacgaggagacttccagcttccaccttcagtttagggaggtgacagtcacacttgacgatgtggcctctttgctgc 30712868  T
Q  532 atctccccattgaaggcatgctcctgtcccacg 564  Q
    || ||||||||||||||||||||||||||||||    
T  30712867 atatccccattgaaggcatgctcctgtcccacg 30712835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 39973409 - 39973556
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  39973409 attgaccatggtctgatttgtgtctttgtggagaggtggtacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttgacgatg 39973508  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| |||||||| | |||||||||||||||||||    
T  39973509 tggcctctttgctgcatatccccattaacggcatgctcctgtcccacg 39973556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 47247658 - 47247805
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||    
T  47247658 attgaccatagtctgatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttgtggagatgacagtcacacttgacgatg 47247757  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| |||||||| | | ||||||| |||||||||    
T  47247758 tggcctctttgctgcatatccccattaacgacatgctcttgtcccacg 47247805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 410 - 564
Target Start/End: Complemental strand, 46271872 - 46271718
Alignment:
Q  410 caacctcattgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacactt 509  Q
    |||||| ||||||| |||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||| | | | || |||||||||||||||||    
T  46271872 caacctgattgaccatggtctgatttgtgcctttgtagagaggtggcacgaagagccttccagcttccacctttcgtatgggaagatgacagtcacactt 46271773  T
Q  510 gatgatgtagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    || ||||||||   |||||||||| |||||||||| |||||||||||||||||||    
T  46271772 gacgatgtagcctctttgctgcatatccccattgacggcatgctcctgtcccacg 46271718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 20219430 - 20219283
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||| |||||||||| ||||    
T  20219430 attgaccatggtctgatttgtgtctttgtggagaggtggcacaaggagacttccagcttccaccttctgtttggggagatgacaatcacacttgacgatg 20219331  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| ||||| |||| |||||||||||||||||||    
T  20219330 tggcttatttgctgcatatccccgttgacggcatgctcctgtcccacg 20219283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 427 - 556
Target Start/End: Complemental strand, 31188331 - 31188202
Alignment:
Q  427 gtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgttt 526  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||   |||    
T  31188331 gtctgatttgtgcctttgtggagaggtggcacaaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgatgatgtggcctcttt 31188232  T
Q  527 gctgcatctccccattgaaggcatgctcct 556  Q
    ||||||| ||| |||||| | |||||||||    
T  31188231 gctgcatatcctcattgacgacatgctcct 31188202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 179 - 397
Target Start/End: Original strand, 47247387 - 47247600
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||||||||||| ||||||||||||| ||| || |  |    
T  47247387 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagccatgagtttaaactcactt 47247485  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |     |||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |  | |||||||||| | || ||||  ||||    
T  47247486 t-----attaattttaattatttgcagtggcgtggaaaattaaaatgcatcaacaacgaaaagaagatagaagcgatgcatgataatgacaccagaccta 47247580  T
Q  378 tcatgactgcacagtggtgg 397  Q
    ||||| |||||| |||||||    
T  47247581 tcatggctgcacggtggtgg 47247600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 179 - 397
Target Start/End: Complemental strand, 30713253 - 30713040
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||||||||||| |||| |||||||| ||| || |  |    
T  30713253 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaacccatgagtttaaactcactt 30713155  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |     |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |  | |||||||||| | || ||||  ||||    
T  30713154 t-----attaattttaattatttgcagtggcgtggaaaattaaaatgcatcaacaacggaaagaagatagaagcgatgcatgataatgacaccaaaccta 30713060  T
Q  378 tcatgactgcacagtggtgg 397  Q
    |||||  ||||| |||||||    
T  30713059 tcatggttgcacggtggtgg 30713040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 28244420 - 28244538
Alignment:
Q  448 agaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccattgaagg 547  Q
    ||||||| |||||||||||||| |||||||| ||||| ||| ||||||||||||| ||||||||||||||  || ||||| ||||| |||||||||| ||    
T  28244420 agaggtgtcacgaggagacttcgagcttccatcttccgtttggggagatgacagtgacacttgatgatgtgtcatgtttgttgcatatccccattgatgg 28244519  T
Q  548 catgctcctgtcccacgag 566  Q
    |||||||||||||||||||    
T  28244520 catgctcctgtcccacgag 28244538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 105 - 397
Target Start/End: Original strand, 39973062 - 39973351
Alignment:
Q  105 gcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa--tctgtgtgaaaat 202  Q
    |||||||||||||  |||| |||||||||||| || || ||||||  | | ||| || |||| ||||||||||||||||||||||  ||  | | |||||    
T  39973062 gcccacacgagacttgcctgctttggaagtaccatctgcacgtggccaagaaggcgggtgatggcgaggtatttattaatgttaaattcactttaaaaat 39973161  T
Q  203 gatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatttg 301  Q
    ||||||||||||||||||||    ||| ||||||| |||||||||||||| ||||| ||||||| ||| || |  ||     |||  |||||||||||||    
T  39973162 gatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagtcatgagtttaaactcacttt-----attaattttaattatttg 39973255  T
Q  302 cagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgcacagtggtgg 397  Q
    |||||| ||||||||||||||||||||| |||||||||||| || |  |  ||||||||| | || ||||  ||||||||| |||||| |||||||    
T  39973256 cagtggtgtggaaaattaaaatgcatcaacaacggaaagaagatagaagcaatgcatgataatgacaccagacctatcatggctgcacggtggtgg 39973351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 417 - 562
Target Start/End: Complemental strand, 20216470 - 20216325
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    |||||||  ||||| |||| ||| ||||||||||||||| ||||||||||||| || || |||||||| ||| ||||||||||| | |||||||||||||    
T  20216470 attgaccacggtctaatttctgcatttgtggagaggtggtacgaggagacttcgagttttcaccttccgtttggggagatgacaatgacacttgatgatg 20216371  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtccca 562  Q
    |  |  ||||||| |||||||||||||| |||||||| ||||||||    
T  20216370 tgtcttgtttgcttcatctccccattgatggcatgcttctgtccca 20216325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 103 - 342
Target Start/End: Complemental strand, 20221398 - 20221144
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatg----------------- 185  Q
    ||||||||||||||| | ||| |||||||||||| ||||| |||||| |||| ||| || |||| ||||||||||||||||||                     
T  20221398 tggcccacacgagactgacctgctttggaagtaccatgtgcacgtggctaggaaggcgggtgatggcgaggtatttattaatgttaaactcacttaatta 20221299  T
Q  186 ---ttaatctgtgtgaaaatgatgttgatatttgtgaaac-aattgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtttgg 281  Q
       ||||||| |||||||||||||||||||||||||||||    ||| ||||||| |||||||||||||| ||||||||| ||| ||| || |  |        
T  20221298 atgttaatctatgtgaaaatgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagccataagtttaaactcactt---- 20221204  T
Q  282 gtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
     ||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  20221203 -tattaattttaattatttgcagtggcgtggaaaattaaaatgcatcaacaaaggaaagaa 20221144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 180 - 342
Target Start/End: Complemental strand, 46272134 - 46271977
Alignment:
Q  180 ttaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac-aattgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtt 278  Q
    ||||||||||||||||||||||||||||| |||||||||||||    ||| ||||||| |||||||||||||| ||||||||||||| |||  | |  |     
T  46272134 ttaatgttaatctgtgtgaaaatgatgttcatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagccatgagtttaaattcactt- 46272037  T
Q  279 tgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
        ||||  ||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||    
T  46272036 ----tattaattttaattatttgcattggcgtgaaaaattaaaatgcatcaacaacgaaaagaa 46271977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 17275314 - 17275268
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  17275314 tttattaatgttaatctgtgtgaaaatgatgttgatatttttgaaac 17275268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 563
Target Start/End: Complemental strand, 26630579 - 26630453
Alignment:
Q  437 tgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctc 536  Q
    ||||||||| ||||| ||||| ||||||||||| ||||||||  || ||||| |||||| |||| | ||||||||||| ||  |  ||||||||||||||    
T  26630579 tgcctttgttgagagatggcatgaggagacttcgagcttccatatttcatttggggagaggacaatgacacttgatgacgtgtcttgtttgctgcatctc 26630480  T
Q  537 cccattgaaggcatgctcctgtcccac 563  Q
     |||| || ||||||||| || |||||    
T  26630479 tccatcgagggcatgctcttggcccac 26630453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 30713360 - 30713274
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| | ||| |||||||||||| ||||| ||||||  ||| ||| || |||| ||||||||||||||||||||||    
T  30713360 tggcccacacgagactgacctgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgaggtatttattaatgttaa 30713274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 20216679 - 20216583
Alignment:
Q  246 ctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
    |||||| ||||||||||||||||| || ||||||  |||||  ||||||||||||||||||| ||   || |||| |||||||| ||||||||||||    
T  20216679 ctgtttgtgaagccatgagtgtaaactgatgtttatgtattatttttaattatttgcagtggtgtcacaatttaatatgcatcaacaacggaaagaa 20216583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 46272231 - 46272145
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    |||||||||||||||   ||| |||||||||||| ||||| ||||||  ||| ||| || |||| ||||||||||||||||||||||    
T  46272231 tggcccacacgagactaacctgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgaggtatttattaatgttaa 46272145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 25785031 - 25784984
Alignment:
Q  49 atcaacttttcgttttaatccttttaaaatccttcttcaacttttcgt 96  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  25785031 atcaacttttcgttttaatccttctaaaatcttccttcaacttttcgt 25784984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 17275418 - 17275332
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| | ||| || ||||||||| ||||| ||||    ||| ||| ||||||| ||||||||||||||||||||||    
T  17275418 tggcccacacgagactgacctgctgtggaagtaccatgtgcacgtttccaggaaggcggctgatggcgaggtatttattaatgttaa 17275332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 5277692 - 5277646
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaact 90  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||    
T  5277692 aatatatcaacttttcgttttagtccttgtaaaatatttcttcaact 5277646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 1870987 - 1870954
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaa 77  Q
    |||||||||||||||||||||| |||||||||||    
T  1870987 aatatatcaacttttcgttttagtccttttaaaa 1870954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 21849276 - 21849325
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||    
T  21849276 aatatatcaacttttcgttttagtctctttaaaatttttcttcaactttt 21849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 34826641 - 34826592
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||| |||||||||||||||||||| ||||||||  | |||||||||||    
T  34826641 aatatgtcaacttttcgttttaatccctttaaaattttccttcaactttt 34826592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 417 - 560
Target Start/End: Original strand, 235347 - 235490
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  235347 attgaccatggtctgatttgtgcctttgtggagaggtggcacgagtagacttccagcttccaccttccatttggggagatgacattcacacttgatgatg 235446  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcc 560  Q
    | ||  |||||||||||||||||||||| |||||||||||||||    
T  235447 tggcctgtttgctgcatctccccattgacggcatgctcctgtcc 235490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 179 - 411
Target Start/End: Original strand, 235076 - 235303
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||   ||| ||||||| |||||||||||||| ||||||||||||| ||  || |  |    
T  235076 attaatgttaatctgtgtgaaaattatgttgataattgtgaaacagcgtgt-ttatgtaatgttaaatctgtttgtgaagccatgagtttatactcactt 235174  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |     |||  ||||| |||||||||||||||||||||||||| |||||||| |||| ||||||| || |  | || ||||||| |||||||||  ||||    
T  235175 t-----attaattttacttatttgcagtggcgtggaaaattaatatgcatcatcaacagaaagaagatagtagcgacgcatgataaagaaaccaaaccta 235269  T
Q  378 tcatgactgcacagtggtggcatgacagattgca 411  Q
    ||||  |||||| ||||||| |  ||||||||||    
T  235270 tcatcgctgcacggtggtgggagaacagattgca 235303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 234969 - 235055
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| || || || ||||||||| ||||| ||||||  ||| ||| ||||| | |||||||| |||||||||||||    
T  234969 tggcccacacgagactggtctgctgtggaagtaccatgtggacgtggccaggaaggcggctgttggcgaggtagttattaatgttaa 235055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 417 - 567
Target Start/End: Complemental strand, 3408550 - 3408400
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  3408550 attgaccatggtctgatttatgcctttttggagaggtggcacgaggagacttccagcttccaccttccgtttcgggagatgacagtcacacttgacgatg 3408451  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacgagt 567  Q
    | ||   |||||||||| |||||||||| ||||||||||||||||||||||    
T  3408450 tggcctctttgctgcatatccccattgatggcatgctcctgtcccacgagt 3408400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 21639190 - 21639334
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||   |||| ||||||| |||||||||||||||||||    
T  21639190 attgaccatggtctaatttatgcctttgtggagaggtggcacaaggagacttccagcttccacct---atttggggagataacagtcacacttgatgatg 21639286  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||  |||||||||||||| ||||||| |||||||||||||||||||    
T  21639287 tggcctgtttgctgcatctctccattgacggcatgctcctgtcccacg 21639334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 245 - 411
Target Start/End: Original strand, 21638980 - 21639146
Alignment:
Q  245 tctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaata 344  Q
    ||||||| ||||||||||||||||| |||||||||  |||||| ||||| |||||||||||||||||| |||||||||||||||||||||  |||||| |    
T  21638980 tctgtttgtgaagccatgagtgtaaactaatgtttatgtattgtttttatttatttgcagtggcgtggcaaattaaaatgcatcagcaacaaaaagaaga 21639079  T
Q  345 ttggggagatgcatgatgaagaaaccatgcctatcatgactgcacagtggtggcatgacagattgca 411  Q
    |||||||||| |||||  |||||||||  ||||  ||| |||||| |||| |||| |||||||||||    
T  21639080 ttggggagatacatgacaaagaaaccacccctactatggctgcacggtggcggcaggacagattgca 21639146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 179 - 397
Target Start/End: Complemental strand, 3408821 - 3408608
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| || ||| ||||||| |||||||| ||||| | ||||||||||| ||| || |  |    
T  3408821 attaatgttaatctgtgggaaaatgatattgatatttgtgaaactatgtgt-ttatgtaatgttaaatttgtttgttaagccatgagtttaaactcactt 3408723  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
         ||||  ||||||||||||| ||||||||||||||||||||||||||| |||| |||| || || |  | |||||||||| | || ||||  ||||    
T  3408722 -----tattaattttaattatttgtagtggcgtggaaaattaaaatgcatcaacaactgaaaaaagatagaagtgatgcatgataatgacaccagaccta 3408628  T
Q  378 tcatgactgcacagtggtgg 397  Q
    |||||  ||||| |||||||    
T  3408627 tcatggttgcacggtggtgg 3408608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 441 - 553
Target Start/End: Complemental strand, 32467328 - 32467216
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||| |||||||||||||||||| || || |||||||| |||||||||  |||||||||||| ||||||||||||||  || |||||||||||||||||     
T  32467328 tttgcggagaggtggcacgaggatacatcgagcttccatcttccattttaggagatgacagtgacacttgatgatgtgtcatgtttgctgcatctccccc 32467229  T
Q  541 ttgaaggcatgct 553  Q
    |||| || |||||    
T  32467228 ttgatggtatgct 32467216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 542
Target Start/End: Original strand, 15342994 - 15343095
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||| |||||||||||||  |||||| || |||||||| ||||||||| |||||||||  || | ||| ||||||||  || ||||||||||||||||||    
T  15342994 tttgcggagaggtggcacacggagacatcgagcttccatcttccattttgggagatgattgtgatactcgatgatgtgtcatgtttgctgcatctcccca 15343093  T
Q  541 tt 542  Q
    ||    
T  15343094 tt 15343095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 3408917 - 3408831
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||| ||||| | ||| |||||||||||| ||||| ||||||  ||| ||| || |||| ||||||||||||||||||||||    
T  3408917 tggcccacatgagactgacctgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgaggtatttattaatgttaa 3408831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 5192290 - 5192241
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||||||||| ||||||  | |||||||||||    
T  5192290 aatatatcaacttttcgttttaatccttgtaaaattttccttcaactttt 5192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 41766811 - 41766860
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||||||||||||  | |||||||||||    
T  41766811 aatatatcaacttttcgttttagtccttttaaaattttccttcaactttt 41766860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 21638861 - 21638953
Alignment:
Q  97 tctcgatggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||| |||||||||||| || |||||  | |||| |||| ||||| ||||||  ||| ||| ||||||| ||||||| ||||||||||||||    
T  21638861 tctcggtggcccacacgacactggcctgttgtggaggtaccatgtgcacgtggccaggaaggcggctgatggcgaggtttttattaatgttaa 21638953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 6197164 - 6197213
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||||||||||||| |||||||||| ||||||||  | |||||||||||    
T  6197164 aatatatcaactttttgttttaatccctttaaaattttccttcaactttt 6197213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 9437080 - 9437129
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||| ||||||||||||||| ||||||||||||  | |||||||||||    
T  9437080 aatataccaacttttcgttttagtccttttaaaattttccttcaactttt 9437129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 12565926 - 12565877
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||| ||||||||||||||| ||||||||  | |||||||||||    
T  12565926 aatatatcaaattttcgttttaatccctttaaaattttccttcaactttt 12565877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 29386928 - 29386977
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||| ||||||||||||||| ||||||||||||  | |||||||||||    
T  29386928 aatataccaacttttcgttttagtccttttaaaattttccttcaactttt 29386977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 36831804 - 36831951
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  36831804 attgaccatggtttgatctgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgatgatg 36831903  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| ||||||||||  ||||||||||||||||||    
T  36831904 tggcctctttgctgcatatccccattgacagcatgctcctgtcccacg 36831951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 417 - 567
Target Start/End: Original strand, 43095522 - 43095672
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| |||||| |||||| |||||||||||| ||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| ||||    
T  43095522 attgaccatggtctgatttgtacctttgcggagaggtggcatgaggagacttccagcttccactttctatttggggagataacagtcacacttgacgatg 43095621  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacgagt 567  Q
    | ||   |||||||||| |||||||||| ||||||||||||||||||||||    
T  43095622 tggcctctttgctgcatatccccattgacggcatgctcctgtcccacgagt 43095672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 176 - 394
Target Start/End: Original strand, 36831531 - 36831744
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||||||||||| ||||||||| ||| ||| || |    
T  36831531 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacttcctgt-ttatgtaatgttaaatctgtttctgaagccataagtttaaactca 36831629  T
Q  275 tgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgc 374  Q
      ||     |||  ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |  |||||||||||||| || ||||  |    
T  36831630 cttt-----attaattttaattatttgcaatggcgtggaaaattaaaatgcatcaacaacggaaagaagatagaagagatgcatgatgatgacaccagac 36831724  T
Q  375 ctatcatgactgcacagtgg 394  Q
    |||||||| |||||| ||||    
T  36831725 ctatcatggctgcacggtgg 36831744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 42277684 - 42277831
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  42277684 attgaccatggtctaatttgtgccttcgttgagaggtggcacgaggagacttccaacttccaccttccgtttggggagatgacagtcacacttgatgatg 42277783  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    |  |   |||| ||||| ||| |||||| |||||||||||||||||||    
T  42277784 tgacctctttgatgcatatccgcattgatggcatgctcctgtcccacg 42277831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 103 - 342
Target Start/End: Original strand, 43095173 - 43095409
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaatctg--tgtgaaa 200  Q
    ||||||||| | ||| ||||| |||||||||||| ||||| |||||| |||| ||| || |||| |||||||||||||||||||||| ||   | | |||    
T  43095173 tggcccacatgtgactggcctgctttggaagtaccatgtgcacgtggctaggaaggcgggtgatggcgaggtatttattaatgttaaactcactttaaaa 43095272  T
Q  201 atgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatt 299  Q
    ||||||||||||||||||||||    ||| ||||||| |||||||||||||| |||||| |||||| ||| || |  ||     |||  |||||||||||    
T  43095273 atgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagcaatgagtttaaactcacttt-----attaattttaattatt 43095366  T
Q  300 tgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  43095367 tgcagtggcgtggaaaattaaaatgcatcaacaacggaaagaa 43095409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 432 - 566
Target Start/End: Complemental strand, 14090506 - 14090372
Alignment:
Q  432 atttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgc 531  Q
    |||||||| |||||||||||||| |||||||||||||| || ||||||||| ||||  ||| ||||||||| ||||||||||||||  || |||||||||    
T  14090506 atttgtgcatttgtggagaggtgacacgaggagacttcgagtttccacctttcattaggggggatgacagtgacacttgatgatgtgtcatgtttgctgc 14090407  T
Q  532 atctccccattgaaggcatgctcctgtcccacgag 566  Q
    ||||||||||||| |||||||| || |||||||||    
T  14090406 atctccccattgatggcatgcttctctcccacgag 14090372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 563
Target Start/End: Complemental strand, 34662368 - 34662225
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||| |||||||| ||||||||||||| |  |    
T  34662368 attgaccatggtctgatttgtgcctttgtggaaaggtggcacaagaagacttccagcttccaccttccgtttggggagatg-cagtcacacttgacg--g 34662272  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccac 563  Q
    | ||   |||||||||| |||||||||| |||| ||| |||||||||    
T  34662271 tggcctctttgctgcatatccccattgacggcacgctgctgtcccac 34662225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 103 - 389
Target Start/End: Original strand, 5339306 - 5339588
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaatctg--tgtgaaa 200  Q
    ||||||||||||||| | | | |||||||||||| ||||| ||||||  ||| ||| || |||| ||||||||||||| |||||||| ||   | | |||    
T  5339306 tggcccacacgagactgacgtgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgaggtatttatcaatgttaaactcactttaaaa 5339405  T
Q  201 atgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatt 299  Q
    || |||||||||||||||||||    ||| ||||||| |||||||||||||| ||||||||||||| ||| || |  ||     |||  ||||||||| |    
T  5339406 at-atgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagccatgagtttaaactcacttt-----attaattttaattact 5339498  T
Q  300 tgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgcac 389  Q
    | || ||||||||||||||||||||||||| |||||||||||| || |  | |||||||||| | || ||||  ||||||||| ||||||    
T  5339499 ttcattggcgtggaaaattaaaatgcatcaacaacggaaagaagatagaagcgatgcatgataatgacaccagacctatcatggctgcac 5339588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 42277518 - 42277597
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |  | |||||||||||||||||    
T  42277518 ttttaattatttgcagtggcgtggaaaattaaaatgcatcaacaacggaaagaaaatagaagcgatgcatgatgaagaaa 42277597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 389
Target Start/End: Complemental strand, 27470925 - 27470825
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgca 388  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |  | |||||||||||| || ||||  ||||||||| |||||    
T  27470925 ttttaattatttgcagtggcgtggaaaattaaaatgcatcatcaacagaaagaagatagaagcgatgcatgatgatgacaccagacctatcatggctgca 27470826  T
Q  389 c 389  Q
    |    
T  27470825 c 27470825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 544
Target Start/End: Original strand, 8269110 - 8269212
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||| ||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||| |||||| ||||||| ||| ||||||| |||||  |||    
T  8269110 tttgcggagaggtggcacgaggagacatcaagcttccatcttccatttcgggagatgacagtgacacttaatgatgt-gcatgtttgctccatcttacca 8269208  T
Q  541 ttga 544  Q
    ||||    
T  8269209 ttga 8269212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 435 - 496
Target Start/End: Complemental strand, 27470748 - 27470687
Alignment:
Q  435 tgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagat 496  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||    
T  27470748 tgtgcctttgtggagaggtgacacgaggagacttccagcttccaccttccgtttggggagat 27470687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 14090730 - 14090634
Alignment:
Q  246 ctgtttatgaagccatgagtgtaagctaatgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
    |||||| ||||||||||| || || || |||||| ||||||| ||| |||||||||||||||  |||||| ||||||||||||| ||||||||||||    
T  14090730 ctgtttgtgaagccatgaatgcaaactgatgtttaggtattgttttcaattatttgcagtggtatggaaatttaaaatgcatcaacaacggaaagaa 14090634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 34662530 - 34662481
Alignment:
Q  293 aattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34662530 aattatttgcagtggcgtgaaaaattaaaatgcatcaacaacggaaagaa 34662481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 34663710 - 34663624
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac-aattgtcttatgtactgttaaatctgtttatgaagccatgagt 265  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    ||| ||||||| |||||||| ||||| |||||||||||||    
T  34663710 attaatgttaatatgtgtaaaaatgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatatgtttgtgaagccatgagt 34663624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 34663817 - 34663731
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    |||||||||||| || ||||| |||||||||||| ||||| ||||||  ||| ||| || |||| |||||||||||| |||||||||    
T  34663817 tggcccacacgatactggcctgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcgaggtatttactaatgttaa 34663731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 36831405 - 36831491
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    |||||||||||||||  |||| || ||||||||| ||||| ||||||  ||| ||| | ||||| ||||||||||||||||||||||    
T  36831405 tggcccacacgagactagcctgctgtggaagtaccatgtgcacgtggccaggaaggcgactgatggcgaggtatttattaatgttaa 36831491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 564
Target Start/End: Original strand, 5343323 - 5343414
Alignment:
Q  473 cttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    |||||| ||||| ||| |||| |||||||||||||||||  |||| ||   | ||||| || |||||||||| |||||||||||||||||||    
T  5343323 cttccagcttccgtttggggaaatgacagtcacacttgacaatgtggcctctctgctgtatatccccattgacggcatgctcctgtcccacg 5343414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 6655764 - 6655813
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  6655764 aatatatcaacttttcgttttaatcctcttaaaaaatttcttcaactttt 6655813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 6736166 - 6736215
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||    
T  6736166 aatatatcaacttttcgttttaatcctcttaaaaaatttcttcaactttt 6736215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 5339654 - 5339692
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtgg 455  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  5339654 attgaccatggtctgatttgtgcctttgtggagaggtgg 5339692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 6745475 - 6745524
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaacttttc 94  Q
    ||||||||||||||||||||||||||| ||||||   ||||||||||||||    
T  6745475 aatatatcaacttttcgttttaatcctcttaaaa-aattcttcaacttttc 6745524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 42277327 - 42277413
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| | ||| || |||| |||| ||||| ||||||  ||| ||| ||||||| ||| | ||||||||||||||||    
T  42277327 tggcccacacgagactgacctgctgtggaggtaccatgtgcacgtggccaggaaggcggctgatggcgtgatatttattaatgttaa 42277413  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 2211731 - 2211764
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaa 77  Q
    |||||||||||||||||||||||||| |||||||    
T  2211731 aatatatcaacttttcgttttaatccctttaaaa 2211764  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 5728708 - 5728757
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||| |||||||   |||||||||||||    
T  5728708 aatatatcaacttttcgttttagtccctttaaaaaatttcttcaactttt 5728757  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 23130178 - 23130129
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||| |||||||||||||||| ||| ||||||||  |||||||||||||    
T  23130178 aatatgtcaacttttcgttttagtccctttaaaatttttcttcaactttt 23130129  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 39276961 - 39276912
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||| |||||||||||||||| ||| ||||||||  |||||||||||||    
T  39276961 aatatgtcaacttttcgttttagtccctttaaaatttttcttcaactttt 39276912  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 23769909 - 23769857
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaacttttcgt 96  Q
    |||||||||||||||||||||| ||| | ||||||  | ||||||||||||||    
T  23769909 aatatatcaacttttcgttttagtccctctaaaattttccttcaacttttcgt 23769857  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 38389460 - 38389512
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaacttttcgt 96  Q
    ||||||| |||||||||||||| ||||| ||||||  | ||||||||||||||    
T  38389460 aatatatgaacttttcgttttagtccttctaaaattttccttcaacttttcgt 38389512  T

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Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 8626722 - 8626575
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||     
T  8626722 attgaccatggtctgatttgtgcctttgtggataggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgacgata 8626623  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| ||||||||||  ||||||||||||||||||    
T  8626622 tggcctctttgctgcatatccccattgacagcatgctcctgtcccacg 8626575  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 39348053 - 39348200
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  39348053 attgaccatggtctgatctgtgcctttgtggagaggtggcacgaggatacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatg 39348152  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| |||||||| | |||||||||||||||||||    
T  39348153 tggcctctttgctgcatatccccatttacggcatgctcctgtcccacg 39348200  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 437 - 564
Target Start/End: Original strand, 51897494 - 51897621
Alignment:
Q  437 tgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctc 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||   |||||||||| ||    
T  51897494 tgcctttgtggagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatgtggcctctttgctgcatatc 51897593  T
Q  537 cccattgaaggcatgctcctgtcccacg 564  Q
    |||||||| |||||||||||||||||||    
T  51897594 cccattgacggcatgctcctgtcccacg 51897621  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 417 - 563
Target Start/End: Original strand, 43722357 - 43722503
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  43722357 attgaccatggtctgatctgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttctgtttagggagatgacagtctcacttgatgatg 43722456  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccac 563  Q
    | ||   |||||||||| ||| |||||| |||||| |||||||||||    
T  43722457 tggcctctttgctgcatatcctcattgacggcatgatcctgtcccac 43722503  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 563
Target Start/End: Original strand, 42722956 - 42723083
Alignment:
Q  436 gtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatct 535  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||| ||   |||||||||| |    
T  42722956 gtgcctttgtggaaaggtggcacgaggagacttccagcttccacctttcgtttggggaaatgacagtcacacttgatgatgtggcctctttgctgcatat 42723055  T
Q  536 ccccattgaaggcatgctcctgtcccac 563  Q
    || |||||| ||||||||||||||||||    
T  42723056 cctcattgatggcatgctcctgtcccac 42723083  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 42722771 - 42722893
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgca 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  | |||||||||||| || ||||  ||||||||| |||||    
T  42722771 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaagatagaagtgatgcatgatgatgacaccagacctatcatggctgca 42722870  T
Q  389 cagtggtggcatgacagattgca 411  Q
    |  |||||| |  ||||||||||    
T  42722871 cgatggtgggagaacagattgca 42722893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 179 - 395
Target Start/End: Original strand, 39347782 - 39347993
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    ||| ||||||| |||||||| ||||| | ||||| | ||| ||| || |  |    
T  39347782 attaatgttaatctgagtgaaaatgatgttgatatttgtgaaactgcctgt-ttatgtaatgttaaatttgtttgtaaagccgtaagtttaaactcac-t 39347879  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |||    ||  |||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |  |||||||||||||| || | ||  ||||    
T  39347880 ttg----ttaattttaattatttgctgtggcgtggaaaattaaaatgcatcaacaacggaaagaagatagaagagatgcatgatgatgacatcaaaccta 39347975  T
Q  378 tcatgactgcacagtggt 395  Q
    ||||| |||||| |||||    
T  39347976 tcatggctgcacggtggt 39347993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 566
Target Start/End: Complemental strand, 27991774 - 27991649
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||| |||||| ||| ||||| ||||||| |||||||| |||||||||| ||||||||| || ||||||||||||||  || |||||||| |||||||||    
T  27991774 tttgaggagagatggaacgagaagacttcgagcttccatcttccatttacggagatgacggtgacacttgatgatgtgtcatgtttgctggatctcccca 27991675  T
Q  541 ttgaaggcatgctcctgtcccacgag 566  Q
    |||| |||||| |  |||||||||||    
T  27991674 ttgatggcatgttgttgtcccacgag 27991649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 8626994 - 8626849
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaa-caattgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    |||||||||||||||||| ||||||||||||||||||||||||     ||| ||||||| |||||||||||||| ||||||||||||| ||| || |  |    
T  8626994 attaatgttaatctgtgtcaaaatgatgttgatatttgtgaaattgcgtgt-ttatgtaatgttaaatctgtttgtgaagccatgagtttaaactcactt 8626896  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatca 329  Q
         ||||  |||||||||||||||||||||||||||||||||||| ||||    
T  8626895 -----tattaattttaattatttgcagtggcgtggaaaattaaaatgtatca 8626849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 43722191 - 43722298
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgca 388  Q
    ||||||||||||||| || | |||||||||||||||||||| |||||||||||| || |  |||||||||||||| || ||||  |||||||||  ||||    
T  43722191 ttttaattatttgcaatgacttggaaaattaaaatgcatcaacaacggaaagaagatagaagagatgcatgatgatgacaccagacctatcatggttgca 43722290  T
Q  389 cagtggtg 396  Q
    ||||||||    
T  43722291 cagtggtg 43722298  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 51897274 - 51897359
Alignment:
Q  297 atttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatg 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |  | |||||||||||| || ||||  |||||||||    
T  51897274 atttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaagatagaagcgatgcatgatgatgacaccagacctatcatg 51897359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 8627090 - 8627004
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| ||| | |||||||||||| ||||| || |||  ||| ||| || |||| ||||||||||||||||||||||    
T  8627090 tggcccacacgagactggcttgctttggaagtaccatgtgcacatggccaggaaggcgggtgatggcgaggtatttattaatgttaa 8627004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 39347675 - 39347761
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| |||||  | ||||||||| ||||| ||||||  ||| |||||| |||| ||||| ||||||||||||||||    
T  39347675 tggcccacacgagactggcctgttgtggaagtaccatgtgcacgtggccaggaaggtggttgatggcgagatatttattaatgttaa 39347761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 560
Target Start/End: Original strand, 23458529 - 23458647
Alignment:
Q  442 ttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccat 541  Q
    |||||||||| |||||||||||||| || | ||| || ||||| ||| |||| |||| |||  |||| ||||||||  || |||||||||||||| ||||    
T  23458529 ttgtggagagatggcacgaggagacatcgaactttcatcttccgtttggggatatgatagtggcactggatgatgtgtcatgtttgctgcatctcgccat 23458628  T
Q  542 tgaaggcatgctcctgtcc 560  Q
     || || |||||| |||||    
T  23458629 cgagggtatgctcttgtcc 23458647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 42722603 - 42722689
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| ||||| || |||| |||| ||||| ||||||  ||| ||| ||||||| | | ||||||||||||||||||    
T  42722603 tggcccacacgagactggcctgctgtggaggtaccatgtgcacgtggccaggaaggcggctgatggtgtggtatttattaatgttaa 42722689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 51897077 - 51897163
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| ||||| || |||| |||| ||||| ||||||  ||| ||| ||||||| ||| | ||||||||||||||||    
T  51897077 tggcccacacgagactggcctgctgtggaggtaccatgtgcacgtggccaggaaggcggctgatggcgtgatatttattaatgttaa 51897163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 43722083 - 43722130
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgata-tttgtgaaac 222  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  43722083 tttattaattttaatttgtgtgaaaatgatgttgatattttgtgaaac 43722130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 21565130 - 21565180
Alignment:
Q  470 cagcttccaccttccatttagggagatgacagtcacacttgatgatgtagc 520  Q
    ||||||||| |||||| |||||||||| ||  |||||||||||||||||||    
T  21565130 cagcttccatcttccagttagggagataaccatcacacttgatgatgtagc 21565180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 41748904 - 41748958
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaacttttcgttc 98  Q
    |||||||||||||||||||||| ||| ||||||||  | ||||||||||| ||||    
T  41748904 aatatatcaacttttcgttttagtccctttaaaattttccttcaactttttgttc 41748958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 43721979 - 43722065
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    |||||| || ||||| | ||| || ||||||||| ||||| ||||||  ||| ||  ||||||| ||||||||||||||||||||||    
T  43721979 tggcccgcatgagactgacctgctgtggaagtaccatgtgcacgtggccaggaagacggctgatggcgaggtatttattaatgttaa 43722065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 3106649 - 3106698
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||||||||||||| |||||| ||||||||||||  | |||||||||||    
T  3106649 aatatatcaactttttgttttactccttttaaaattttccttcaactttt 3106698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 19113641 - 19113690
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||| |||||||||||||||| ||||||||||||  | |||||||||||    
T  19113641 aatatgtcaacttttcgttttagtccttttaaaattttccttcaactttt 19113690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 26859790 - 26859741
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||||||  ||||||||  | |||||||||||    
T  26859790 aatatatcaacttttcgttttaatctctttaaaattttccttcaactttt 26859741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 27659231 - 27659182
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||| ||||||||  | |||||||||||    
T  27659231 aatatatcaacttttcgttttagtccctttaaaattttccttcaactttt 27659182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 37099828 - 37099877
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||| ||||||||||||||||| ||||||  | |||||||||||    
T  37099828 aatatatcaatttttcgttttaatccttctaaaattttccttcaactttt 37099877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 42163479 - 42163528
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||||||| | ||||||  | |||||||||||    
T  42163479 aatatatcaacttttcgttttaatccctctaaaattttccttcaactttt 42163528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 10885668 - 10885815
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| || ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||    
T  10885668 attgaccatgatctaatttatgcctttgtggggaggtggcacgaggagacttccagcttccagcttccatttggggaaatgaaagtcacacttgatgatg 10885767  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| |||||||||| |||||||||||||||||||    
T  10885768 tggcctctttgctgcatatccccattgatggcatgctcctgtcccacg 10885815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 43628440 - 43628293
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  43628440 attgaccatggtctgatttgtgcctttgtggagaggtggcacgaggagacttccaccttccaccttccgtttggggagatgacagtcacacttgatgatg 43628341  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||| || || |||||||||| | |||| ||||||||||||    
T  43628340 tggcctctttgttgtatatccccattgacgacatgttcctgtcccacg 43628293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 417 - 541
Target Start/End: Original strand, 50543565 - 50543689
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  50543565 attgaccatggtctgatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgacgatg 50543664  T
Q  517 tagcacgtttgctgcatctccccat 541  Q
    | ||   |||||||||| |||||||    
T  50543665 tggcctctttgctgcatatccccat 50543689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 417 - 576
Target Start/End: Original strand, 35065595 - 35065753
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||  ||| ||||||||||| |||| ||||||||||    
T  35065595 attgaccatggtctaatctgtgcctttgtggagaggtggcacgaggagacttccaacttccaccttcggtttggggagatgacaatcac-cttgatgatg 35065693  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacgagttcatctcac 576  Q
    | ||   |||||||||| || ||||||||||||||||| |||||||||||| ||| ||||    
T  35065694 tggcctctttgctgcatatctccattgaaggcatgctcttgtcccacgagtccatatcac 35065753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 417 - 554
Target Start/End: Complemental strand, 28793769 - 28793632
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28793769 attgaccatggtctgatatgtgccattgtgtagaggtggcacgaggagacttccagcttccaccttccatttggggagatgacagtcacacttgatgatg 28793670  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctc 554  Q
    | ||   |||| ||||| ||||||||||  ||||||||    
T  28793669 tggcctctttgttgcatatccccattgacagcatgctc 28793632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 176 - 397
Target Start/End: Original strand, 35065321 - 35065537
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||||| ||||| ||||||||| ||| ||| || |    
T  35065321 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaactgcctgt-ttatgtaatgttaaatttgtttgtgaagccataagtttaaactca 35065419  T
Q  275 tgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgc 374  Q
    | ||     |||  ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| || |  |||||||||||||| || ||||  |    
T  35065420 tttt-----attaattttaattatttgcagtggcgtggaaaatgaaaatgcatcaacaacgaaaagaagatagaagagatgcatgatgatgacaccagac 35065514  T
Q  375 ctatcatgactgcacagtggtgg 397  Q
    ||||||||  ||||| |||||||    
T  35065515 ctatcatggttgcacggtggtgg 35065537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 179 - 411
Target Start/End: Complemental strand, 28794040 - 28793813
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||||| ||||| ||||||||| ||| ||| || |  |    
T  28794040 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaactgcctgt-ttatgtaatgttaaatttgtttgtgaagccataagtttaaactcac-t 28793943  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |||    ||  ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| || |  |||||||||||||| || ||||  ||||    
T  28793942 ttg----ttaattttaattatttgtagtggcgtgaaaaattaaaatgcatcaacaacggaaagaagatagaagagatgcatgatgatgacaccagaccta 28793847  T
Q  378 tcatgactgcacagtggtggcatgacagattgca 411  Q
    ||||| |||||| ||||||| |  ||||||||||    
T  28793846 tcatggctgcacggtggtgggagaacagattgca 28793813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 417 - 517
Target Start/End: Complemental strand, 42097183 - 42097083
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42097183 attgaccatggtctgatctgtgcctttgtgaagaggtgacacgaggagacttccagcttccaccttccgtttagggagatgacagtcacacttgatgatg 42097084  T
Q  517 t 517  Q
    |    
T  42097083 t 42097083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 179 - 368
Target Start/End: Original strand, 10885397 - 10885581
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaa-ttgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||| || |||| |||||||||||||| ||||||||| ||| ||| || |  |    
T  10885397 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaactgcttgt-ttgtgtaatgttaaatctgtttgtgaagccataagtttaaactcactt 10885495  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaa 368  Q
    |     |||  ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |  | |||||||||||||||||    
T  10885496 t-----attaatttgaattatttgcagtggcgtggaaaattaaaatgcatcagcaacagaaagaagatagaagtgatgcatgatgaagaaa 10885581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 32298148 - 32297994
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttcca-------tttagggagatgacagtcacactt 509  Q
    ||||||| |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||        || || |||||||||||||||||    
T  32298148 attgaccatggtctgatctgtgcctttatggagaggtggcacgaggagacttccagcttccaccttccaccttccggttgggtagatgacagtcacactt 32298049  T
Q  510 gatgatgtagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    |||||||| ||   |||||||||| ||||||||||  ||||||||||||||||||    
T  32298048 gatgatgtggcctctttgctgcatatccccattgacagcatgctcctgtcccacg 32297994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 397
Target Start/End: Complemental strand, 32298419 - 32298206
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat---tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaat 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||   ||| ||||||| |||||||| ||||| ||||  ||| ||| ||| || |     
T  32298419 attaatgttaatctgtgtgaaaataatgttgatatttgtgaaa--atgcctgt-ttatgtaatgttaaatttgtttgtgaaatcataagtttaaactcac 32298323  T
Q  276 gtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcc 375  Q
     ||     |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |   ||||||||||||| || ||||  ||    
T  32298322 ttt-----attaattttaattatttgcagtggcgtggaaaattaaaatgcatcaacaacggaaagaagatagcaaagatgcatgatgatgacaccagacc 32298228  T
Q  376 tatcatgactgcacagtggtgg 397  Q
    |||||||||||||| |||||||    
T  32298227 tatcatgactgcacggtggtgg 32298206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 342
Target Start/End: Complemental strand, 43628711 - 43628553
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||| |||||||||||||| |||||| |||||| ||| || |  |    
T  43628711 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagctatgagtttaaactcactt 43628613  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaa 342  Q
    |     |||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  43628612 t-----attaattttaattatttgcagtggcgtggaaaattaaaatgcatcaacaacgaaaagaa 43628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 179 - 397
Target Start/End: Original strand, 50543294 - 50543507
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    ||| ||||||| |||||||| ||||| ||||| ||||||| ||| || |  |    
T  50543294 attaatgttaatctgtgtgaaaatgatgttgatatttgtaaaactgcgtgt-ttatgtaatgttaaatttgtttgtgaagtcatgagtttaaactcactt 50543392  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |     |||  |||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |  | ||||||| || | || ||||  ||||    
T  50543393 t-----attaattttaattatttgcagtgacgtggaaaattaaaatgcatcaacaacggaaagaagatagaagcgatgcatcataatgacaccagaccta 50543487  T
Q  378 tcatgactgcacagtggtgg 397  Q
    ||||| |||||| |||||||    
T  50543488 tcatggctgcacggtggtgg 50543507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 42099029 - 42098943
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| | ||| || ||||||||| ||||| ||||||  ||| ||| ||||||| ||||||||||||||||||||||    
T  42099029 tggcccacacgagactgacctgctgtggaagtaccatgtgcacgtggccaggaaggcggctgatggcgaggtatttattaatgttaa 42098943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 10885294 - 10885380
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||| ||||| ||||| || ||||||||| ||||| ||||||  ||| ||| ||||||| ||| ||||||||||||||||||    
T  10885294 tggcccacatgagactggcctgctgtggaagtaccatgtgcacgtggccaggaaggcggctgatggcgtggtatttattaatgttaa 10885380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 26116015 - 26115933
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatg 185  Q
    ||||||||||||||| ||||| |||||||||||| ||||| ||||||  ||| ||| || |||| || |||||||||||||||    
T  26116015 tggcccacacgagactggcctgctttggaagtaccatgtgcacgtggccaggaaggcgggtgatggcaaggtatttattaatg 26115933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 32298526 - 32298440
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||  ||||| || ||||| ||||||||| ||||||  ||| ||| ||||||| ||||||||||||||||| ||||    
T  32298526 tggcccacacgagaatggcctgctgtggaaatactatgtgcacgtggccaggaaggcggctgatggcgaggtatttattaatattaa 32298440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 35065215 - 35065303
Alignment:
Q  103 tggcccacacgagacgggcctactttggaa--gtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| ||||| || |||||  |||| ||||| ||||||  ||| ||| ||||||| ||||||||||||||||||||||    
T  35065215 tggcccacacgagactggcctgctgtggaaaagtaccatgtgcacgtggccaggaaggcggctgatggcgaggtatttattaatgttaa 35065303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 26115919 - 26115876
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac 222  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  26115919 attaatattaatctgtgtgaaaatgatgttgatatttatgaaac 26115876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 42098925 - 42098843
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac-aattgtcttatgtactgttaaatctgtttatgaagc 258  Q
    |||||||||||||||| |||||||||| |||||||||||| |||||| |  ||| ||||||| |||||||| ||||| ||||||    
T  42098925 tttattaatgttaatccgtgtgaaaataatgttgatatttttgaaactacatgt-ttatgtaatgttaaatttgtttgtgaagc 42098843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 30022727 - 30022776
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  30022727 aatatataaacttttcgttttaatccttctaaaatatttcttcaactttt 30022776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 51681322 - 51681273
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||||||||||||  | |||||||||||    
T  51681322 aatatatcaacttttcgttttagtccttttaaaattttccttcaactttt 51681273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 14422648 - 14422697
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||||| ||||||  | |||||||||||    
T  14422648 aatatatcaacttttcgttttagtccttctaaaattttccttcaactttt 14422697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 28794111 - 28794050
Alignment:
Q  128 tggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||| ||||| ||||||  ||| ||| ||||||| | ||||||||||||||||||||    
T  28794111 tggaagtaccatgtgcacgtggccaggaaggcggctgatggtgaggtatttattaatgttaa 28794050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 34069652 - 34069701
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||| ||||||||  | |||||||||||    
T  34069652 aatatatcaacttttcgttttagtccctttaaaattttccttcaactttt 34069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 47979180 - 47979229
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||||||| | ||||||  | |||||||||||    
T  47979180 aatatatcaacttttcgttttaatccctctaaaattttccttcaactttt 47979229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 417 - 576
Target Start/End: Complemental strand, 30845040 - 30844881
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||    
T  30845040 attgaccatggtctgatctatgcctttgtggagatgtggcacgaggagacttccagcttccaccttccgtttgaggagataacagtcacacttgatgatg 30844941  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacgagttcatctcac 576  Q
    |  |   |||||||||| |||||||||| | ||||||||||||||||| |||||| ||||    
T  30844940 tgacctatttgctgcatatccccattgacgacatgctcctgtcccacgggttcatatcac 30844881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 103 - 411
Target Start/End: Complemental strand, 30845403 - 30845084
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtattt----------------attaatgt 186  Q
    ||||||||||||||| ||||| || ||||||||| ||||| |||||| |||| ||| ||||||| |||||||||||                ||||||||    
T  30845403 tggcccacacgagactggcctgctgtggaagtaccatgtgcacgtggctaggaaggcggctgatggcgaggtattttttaatgttaaactcaattaatgt 30845304  T
Q  187 taatctgtgtgaaaatgatgttgatatttgtgaaacaattgtct---tatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgtttgggt 283  Q
    |||||||||||||||||||||||||||||||||||   ||| ||   |||||| |||||||| | ||| ||||||||| ||| ||| || |  ||||       
T  30845303 taatctgtgtgaaaatgatgttgatatttgtgaaa---ttgcctgtttatgtaatgttaaatttatttgtgaagccataagtttaaactcac-tttg--- 30845211  T
Q  284 attggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatga 383  Q
     ||  |||||||||||||||||||||||||||||||||||||||||  |||||||| || || |  |||||||||||| | || ||||  | ||||||      
T  30845210 -ttaattttaattatttgcagtggcgtggaaaattaaaatgcatcaataacggaaataagatagaagagatgcatgatcatgacaccagacttatcatag 30845112  T
Q  384 ctgcacagtggtggcatgacagattgca 411  Q
    |||||| ||||||| |  ||||||||||    
T  30845111 ctgcacggtggtgggagaacagattgca 30845084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 441 - 553
Target Start/End: Complemental strand, 42459240 - 42459128
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||| ||||||||| |||||||||||||| ||||||||  ||||| ||| |||||||||||| ||||||||||||||  || ||||| ||| ||||||||    
T  42459240 tttgcggagaggtgccacgaggagacttcgagcttccatattccaattaaggagatgacagtgacacttgatgatgtgtcatgtttgatgcgtctcccca 42459141  T
Q  541 ttgaaggcatgct 553  Q
    |||| ||||||||    
T  42459140 ttgatggcatgct 42459128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 566
Target Start/End: Original strand, 901600 - 901719
Alignment:
Q  447 gagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccattgaag 546  Q
    |||||||||||||| |||||||  |||||||| |||| |||| ||||||||||||| ||||||||||||||  || |||||||||| |||||||||||      
T  901600 gagaggtggcacgatgagactttgagcttccatcttctatttggggagatgacagtgacacttgatgatgtgtcatgtttgctgcacctccccattgact 901699  T
Q  547 gcatgctcctgtcccacgag 566  Q
    ||| ||| ||| ||||||||    
T  901700 gcaagcttctgccccacgag 901719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 566
Target Start/End: Complemental strand, 4644965 - 4644846
Alignment:
Q  447 gagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccattgaag 546  Q
    |||||||| ||||||||||| || |||||||| |||   ||| ||||||||| ||| ||||||||||||||  |  |||||||||||||||||||||| |    
T  4644965 gagaggtgacacgaggagacatcgagcttccatcttttgtttggggagatgatagtgacacttgatgatgtgtcgtgtttgctgcatctccccattgatg 4644866  T
Q  547 gcatgctcctgtcccacgag 566  Q
    | |||||  | |||||||||    
T  4644865 gtatgcttttatcccacgag 4644846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 560
Target Start/End: Complemental strand, 33319420 - 33319301
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||||||| || |||||||||||||| || || ||||| ||||| | |  |||||||||||| ||||| ||||||||  | |||||| ||||||| ||||    
T  33319420 tttgtggatagatggcacgaggagacatcgagtttccatcttccgtgtgcggagatgacagtgacactcgatgatgtgtctcgtttgatgcatcttccca 33319321  T
Q  541 ttgaaggcatgctcctgtcc 560  Q
    |||| || |||||| |||||    
T  33319320 ttgatggtatgctcttgtcc 33319301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 26487815 - 26487869
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaacttttcgttc 98  Q
    |||||||||||||||| ||||||||||| |||||   ||||||||||||| ||||    
T  26487815 aatatatcaacttttcattttaatccttctaaaaattttcttcaacttttagttc 26487869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 16072094 - 16072045
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||| | ||||||  |||||||||||||    
T  16072094 aatatatcaacttttcgttttagtccctctaaaatatttcttcaactttt 16072045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 26903061 - 26903012
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||| ||||||||||||||||||||| ||||||  | |||||||||||    
T  26903061 aatataccaacttttcgttttaatccttctaaaattttccttcaactttt 26903012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 36703882 - 36703833
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||||| ||||||  | |||||||||||    
T  36703882 aatatatcaacttttcgttttagtccttctaaaattttccttcaactttt 36703833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 42058970 - 42059019
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||| ||||| ||||||||||||  | |||||||||||    
T  42058970 aatatatcaacttttcattttagtccttttaaaattttccttcaactttt 42059019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 541
Target Start/End: Original strand, 21118243 - 21118327
Alignment:
Q  457 acgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccat 541  Q
    |||||||||| || ||||||||  || |  ||| |||||| ||| | ||||||||||||||  || |||||||||||||||||||    
T  21118243 acgaggagacgtctagcttccatttttcgattaaggagataacaatgacacttgatgatgtgtcatgtttgctgcatctccccat 21118327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 176 - 411
Target Start/End: Complemental strand, 20828742 - 20828512
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaattgtc---ttatgtactgttaaatctgtttatgaagccatgagtgtaagct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||   ||||||| |||||||||||||| ||||||||| | | ||| ||    
T  20828742 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaa---ttgtccgtttatgtaatgttaaatctgtttgtgaagccataaatttaaact 20828646  T
Q  273 aatgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccat 372  Q
     |   |     |||  ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| || |  |||||||||||||| || ||||     
T  20828645 cactat-----attaattttagttatttgcagtggcgtggaaaattaaaatgcatcaacaacagaaagaagatagaagagatgcatgatgatgacaccag 20828551  T
Q  373 gcctatcatgactgcacagtggtggcatgacagattgca 411  Q
     ||||||||| |||||| ||||||| |  ||||||||||    
T  20828550 acctatcatggctgcacggtggtgggagaacagattgca 20828512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 6658676 - 6658821
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || |||||||||||||||||||||||  ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  6658676 attgaccatggtctgatctgtgcctttgtggagaggtggca--aggagacttccagcttccaccttctgtttggggagatgacagtcacacttgatgatg 6658773  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| |||||||||| |  ||| ||||||||||||    
T  6658774 tggcctctttgctgcatatccccattgacgaaatgttcctgtcccacg 6658821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 10014939 - 10015086
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| |||||||||||| ||||||||||||| ||| |||||| |||||| |||||||| ||| |||||||||||||||||||||||||||    
T  10014939 attgaccatggtctgatttgtgcctttatggagaggtggcatgagaagactttcagctttcaccttccgtttggggagatgacagtcacacttgatgatg 10015038  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    | ||   |||||||||| ||||||| || ||  |||||||||||||||    
T  10015039 tggcctctttgctgcatatccccatcgacggattgctcctgtcccacg 10015086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 417 - 564
Target Start/End: Complemental strand, 20828468 - 20828321
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||| ||||||||||||||||||| |    
T  20828468 attgaccatggtctgatctgtgcctttgtggagaggtggcacgaggagacttccaggttccaccttccgttcggggaggtgacagtcacacttgatgacg 20828369  T
Q  517 tagcacgtttgctgcatctccccattgaaggcatgctcctgtcccacg 564  Q
    |  |   ||||||| || |||||||||| |||| ||||||||||||||    
T  20828368 tgacctctttgctggatatccccattgacggcacgctcctgtcccacg 20828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 411
Target Start/End: Original strand, 10014665 - 10014895
Alignment:
Q  176 tttattaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaa 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    ||| || |||  |||||||||||||| ||||||||| ||| ||| || |    
T  10014665 tttattaatgttaatctgtgtgaaaatgatgttgatatttatgaaactgcctgt-ttctgttatgttaaatctgtttgtgaagccataagtttaaactca 10014763  T
Q  275 tgtttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgc 374  Q
      ||     |||  ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| || |  |||||||||||||| || ||||  |    
T  10014764 cttt-----attaattttaattattcgcagtggcgtggaaaattaaaatgcatcaacaacgaaaagaagatagaagagatgcatgatgatgacaccagac 10014858  T
Q  375 ctatcatgactgcacagtggtggcatgacagattgca 411  Q
    |||||||  |||||| ||||||| |  ||||||||||    
T  10014859 ctatcatagctgcacggtggtgggagaacagattgca 10014895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 541
Target Start/End: Original strand, 38364881 - 38365005
Alignment:
Q  417 attgaccgtggtcttatttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatg 516  Q
    ||||||| |||||| || ||||||||||||||| ||||||| ||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||    
T  38364881 attgaccatggtctgatatgtgcctttgtggagtggtggcatgaggagacttctagattccaccttccatttggggagatgatagtcacacttgatgatg 38364980  T
Q  517 tagcacgtttgctgcatctccccat 541  Q
    | ||   |||||||||| |||||||    
T  38364981 tggcctctttgctgcatatccccat 38365005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 6658510 - 6658632
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgca 388  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |  |||||||||||||| || ||||  |||||||||  ||||    
T  6658510 ttttaattatttgcagtggcgtggaaaattaaaatgcatcaacaacggaaagaagatagaagagatgcatgatgatgacaccagacctatcatggttgca 6658609  T
Q  389 cagtggtggcatgacagattgca 411  Q
    | ||||||| |  ||||||||||    
T  6658610 cggtggtgggagaacagattgca 6658632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 179 - 397
Target Start/End: Original strand, 38364610 - 38364823
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaacaat-tgtcttatgtactgttaaatctgtttatgaagccatgagtgtaagctaatgt 277  Q
    |||||||||||||||||||||||| |||||||||||||||||||    ||| ||||||| ||| |||| ||||| ||||||||| ||| ||| || |  |    
T  38364610 attaatgttaatctgtgtgaaaataatgttgatatttgtgaaacttcctgt-ttatgtaatgtgaaatttgtttgtgaagccataagtttaaactcac-t 38364707  T
Q  278 ttgggtattggttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgccta 377  Q
    |||    ||  ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || |  |||||||||||||| || || |  ||||    
T  38364708 ttg----ttaattttaattatttgcagtggagtggaaaattaaaatgcatcaacaatggaaagaagatagaagagatgcatgatgatgacacaagaccta 38364803  T
Q  378 tcatgactgcacagtggtgg 397  Q
    ||||| |||||| |||||||    
T  38364804 tcatggctgcacggtggtgg 38364823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 566
Target Start/End: Complemental strand, 17221846 - 17221721
Alignment:
Q  441 tttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctcccca 540  Q
    |||| |||||||||||||||||||||||| |||||||| | ||| ||| | ||||||||||| ||||||||||||||  |  |||||||||||||||| |    
T  17221846 tttgcggagaggtggcacgaggagacttcgagcttccatcctccttttggcgagatgacagtgacacttgatgatgtgtcctgtttgctgcatctcccta 17221747  T
Q  541 ttgaaggcatgctcctgtcccacgag 566  Q
    |||| |||||| |  |||||||||||    
T  17221746 ttgatggcatgattttgtcccacgag 17221721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 565
Target Start/End: Complemental strand, 43453268 - 43453135
Alignment:
Q  432 atttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgc 531  Q
    |||| ||| ||||||||||||||||| ||||||| ||| |||||||| ||||| ||| ||||||||||| | ||||||||||||||  || ||||| |||    
T  43453268 atttctgcatttgtggagaggtggcatgaggagatttcaagcttccatcttccgtttggggagatgacaatgacacttgatgatgtgtcatgtttgttgc 43453169  T
Q  532 atctccccattgaaggcatgctcctgtcccacga 565  Q
    ||||||  ||| | |||||||| |||||||||||    
T  43453168 atctccaaattaatggcatgcttctgtcccacga 43453135  T

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Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 36339702 - 36339802
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgca 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  |  ||||||||||| || ||||  ||||||||| |||||    
T  36339702 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaagatagaagcaatgcatgatgatgacaccagacctatcatggctgca 36339801  T
Q  389 c 389  Q
    |    
T  36339802 c 36339802  T

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Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 6658434 - 6658477
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  6658434 attaatgttaatctatgtgaaaatgatgttgatatttgtgaaac 6658477  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 6658327 - 6658413
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||||||||| |||||  | ||||||||| || || ||||||  ||| |||  |||||| ||||||||||||||||||||||    
T  6658327 tggcccacacgagactggcctgttgtggaagtaccatatgcacgtggccaggaaggcagctgatggcgaggtatttattaatgttaa 6658413  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 1007602 - 1007651
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||| ||||||||||||||||||||||||||||  | |||||||||||    
T  1007602 aatataccaacttttcgttttaatccttttaaaattttccttcaactttt 1007651  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 7483620 - 7483587
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaa 77  Q
    |||||||||||||||||||||| |||||||||||    
T  7483620 aatatatcaacttttcgttttagtccttttaaaa 7483587  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 15716147 - 15716098
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    ||||| |||||||||||||||||||| ||||||||  | |||||||||||    
T  15716147 aatatgtcaacttttcgttttaatccctttaaaattttccttcaactttt 15716098  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 17222001 - 17221920
Alignment:
Q  317 ttaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgcacagtggtggc 398  Q
    ||||||||||||| |||||| ||||| ||||    |||||||||||| || || | |||||||||||  |||||||||||||    
T  17222001 ttaaaatgcatcaacaacgggaagaagattgatacgatgcatgatgacgatacgaagcctatcatgaacgcacagtggtggc 17221920  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 20205491 - 20205540
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||| |||||| |  |||||||||||||    
T  20205491 aatatatcaacttttcgttttattccctttaaattttttcttcaactttt 20205540  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 20828821 - 20828760
Alignment:
Q  128 tggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    ||||||||| ||||| ||||||| ||| ||| || |||| || |||||||||||||||||||    
T  20828821 tggaagtaccatgtgcacgtggtcaggaaggcggttgatggcaaggtatttattaatgttaa 20828760  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 22030442 - 22030491
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||||||||| ||| | ||||||| | |||||||||||    
T  22030442 aatatatcaacttttcgttttagtccctctaaaatcttccttcaactttt 22030491  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 31703499 - 31703548
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||| ||||||||||||||| ||| ||||||||  |||||||||||||    
T  31703499 aatataccaacttttcgttttagtccctttaaaatttttcttcaactttt 31703548  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 36177640 - 36177689
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||| ||||| ||||||||| ||||||||  |||||||||||||    
T  36177640 aatatatcaatttttctttttaatccatttaaaatttttcttcaactttt 36177689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 43453449 - 43453336
Alignment:
Q  289 ttttaattatttgcagtggcgtggaaaattaaaatgcatcagcaacggaaagaatattggggagatgcatgatgaagaaaccatgcctatcatgactgca 388  Q
    |||||||| ||| |||||||| |  || ||||||||||||| |||||| ||||| ||||    |||||||||||| || | ||  ||||||||||  |||    
T  43453449 ttttaattttttacagtggcgagccaatttaaaatgcatcaacaacgggaagaagattgacttgatgcatgatgacgatatcagacctatcatgaacgca 43453350  T
Q  389 cagtggtggcatga 402  Q
    || |||||||||||    
T  43453349 caatggtggcatga 43453336  T

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Target: scaffold0481 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 566
Target Start/End: Original strand, 10573 - 10705
Alignment:
Q  434 ttgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcat 533  Q
    |||||| ||||  ||||||| |||||||||||| || ||| |||| ||| | ||| ||||||||||||| ||||||||||||||  || |||||||||||    
T  10573 ttgtgcatttgcagagaggtcgcacgaggagacatcgagcctccatcttgcgtttcgggagatgacagtgacacttgatgatgtgtcatgtttgctgcat 10672  T
Q  534 ctccccattgaaggcatgctcctgtcccacgag 566  Q
    ||||||||||| || |||||  |||||||||||    
T  10673 ctccccattgatggtatgcttttgtcccacgag 10705  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 544
Target Start/End: Complemental strand, 25062564 - 25062465
Alignment:
Q  445 tggagaggtggcacgaggagacttccagcttccaccttccatttagggagatgacagtcacacttgatgatgtagcacgtttgctgcatctccccattga 544  Q
    |||||||||| |||||||||||||| |||||||| ||| | ||| || |||||||||| ||||||||||||||  || ||||||| |||||| |||||||    
T  25062564 tggagaggtgacacgaggagacttcgagcttccatctttcgtttgggaagatgacagtgacacttgatgatgtgtcatgtttgcttcatctctccattga 25062465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 3146999 - 3146917
Alignment:
Q  179 attaatgttaatctgtgtgaaaatgatgttgatatttgtgaaac-aattgtcttatgtactgttaaatctgtttatgaagccat 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||    ||| ||||||| |||||||||||||| |||||||||    
T  3146999 attaatgttaatttgtgtgaaaatgatgttgatatttgtgaaactgcgtgt-ttatgtaatgttaaatctgtttgtgaagccat 3146917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 3147095 - 3147009
Alignment:
Q  103 tggcccacacgagacgggcctactttggaagtactatgtgtacgtggttagggaggtggctgatagcgaggtatttattaatgttaa 189  Q
    |||||||||| |||| |||||  ||||||||||| ||||| ||||||  ||| ||| || ||||  |||||||||||||||||||||    
T  3147095 tggcccacacaagactggcctgttttggaagtaccatgtgcacgtggccaggaaggcgggtgatgacgaggtatttattaatgttaa 3147009  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 7268468 - 7268517
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||| ||||||||| ||||||||  | |||||||||||    
T  7268468 aatatatcaacttttcattttaatccctttaaaattttccttcaactttt 7268517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 28667496 - 28667447
Alignment:
Q  44 aatatatcaacttttcgttttaatccttttaaaatccttcttcaactttt 93  Q
    |||||||||||||||| ||||| ||||||||||||  | |||||||||||    
T  28667496 aatatatcaacttttctttttagtccttttaaaattttccttcaactttt 28667447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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