View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_121 (Length: 277)
Name: NF20151_low_121
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_121 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 5967623 - 5967368
Alignment:
| Q |
15 |
atatgtttctatatgcaaaccaattaatacaagaaaagaaatatcactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaa |
114 |
Q |
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| T |
5967623 |
atatgtttctatatgcaaaccaattaatacaagaaaagaaatatcactcaccaatccgcttaaagctgaccaaaggtgcaaccacaacaaatgttgcgaa |
5967524 |
T |
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| Q |
115 |
ggtaataacaaatgtacgccctgtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcaca |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5967523 |
ggtaataacaaatgtacgcccggtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcaca |
5967424 |
T |
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| Q |
215 |
tcacctacaatatgaataaaaacaaaattgaattatacaaccttaaattcttctct |
270 |
Q |
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| T |
5967423 |
tcacctacaatatgaacaaaaacaaaattgaattatacaaccttaaattcttctct |
5967368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 57 - 266
Target Start/End: Complemental strand, 5933558 - 5933350
Alignment:
| Q |
57 |
atcactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaaggtaataacaaatgtacgccctgtccaccaatggacaccaaa |
156 |
Q |
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| T |
5933558 |
atcactcaccaatttgcttaaagctgaccagaggtgcaaacacagcaagtgttgtaaaggtaagaacaaatgtacgcccagtccaccaatggactccaaa |
5933459 |
T |
|
| Q |
157 |
ccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaatatgaataaaaacaaaattgaattatacaacc |
256 |
Q |
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| T |
5933458 |
ccatccttcgaggataccagaatggtgaattccacttgaagttgttccagaaaccacatcacctacaatacgaa-caaaacaaaatagaattatacaacc |
5933360 |
T |
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| Q |
257 |
ttaaattctt |
266 |
Q |
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|||| ||||| |
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| T |
5933359 |
ttaagttctt |
5933350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 5983525 - 5983333
Alignment:
| Q |
32 |
aaccaattaatacaagaaaagaaatatcactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaaggtaataacaaatgtac |
131 |
Q |
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||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||| |||||| || || ||||||||||| |
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| T |
5983525 |
aaccaattaatacaagaaaagcaaaatcactaaccaatccgcttaaagctgaccaaaggtgcaaacacagcaagtgttgcaaaaacaagaacaaatgtac |
5983426 |
T |
|
| Q |
132 |
gccctgtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaa |
224 |
Q |
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| T |
5983425 |
gcccggtccaccaatggacaccaaaccatccttcaagtataccaggatggtgaattccacttgaagttgttcctgaaatgacatcgcctacaa |
5983333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 5962133 - 5961966
Alignment:
| Q |
59 |
cactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaaggtaataacaaatgtacgccctgtccaccaatggacaccaaacc |
158 |
Q |
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||||||||||| ||||| ||||||||||||||| ||| |||||||| ||||| || || ||||||||| ||||| |||||||||||||||||||||| |
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| T |
5962133 |
cactcaccaattcgctttaagctgaccaaaggtccaaacacagcaagtgttgtaaaaacaacaacaaatgtgcgcccagtccaccaatggacaccaaacc |
5962034 |
T |
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| Q |
159 |
atccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaata |
226 |
Q |
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| T |
5962033 |
atccttcaaggataccaggatggtgaattccacctgaagtcgttccagaaatcacatcacctacaata |
5961966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 11044173 - 11044030
Alignment:
| Q |
121 |
aacaaatgtacgccctgtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacct |
220 |
Q |
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|||||||||| |||| ||||| ||||| |||||| || | ||||||| || | ||| ||||||||||| | ||| |||||||| || ||||||||||||| |
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| T |
11044173 |
aacaaatgtatgcccagtccaacaatgaacaccagacaacccttcaaagatatcagaatggtgaattctatttgcagttgttctagtaatcacatcacct |
11044074 |
T |
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| Q |
221 |
acaatatgaataaaaacaaaattgaattatacaaccttaaattctt |
266 |
Q |
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| T |
11044073 |
ataatacaaataaaa--caaattgaattatacagacttaagttctt |
11044030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 55925070 - 55925157
Alignment:
| Q |
137 |
gtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaatatgaa |
230 |
Q |
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||||||||||| | |||||||||||||||||||| ||| |||||||||||||||| |||||| |||| |||||||||||| |||||||| |
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| T |
55925070 |
gtccaccaatgaataccaaaccatccttcaaggatacc-----ggtgaattccacttgatgttgtt-aagaagtcacatcacctataatatgaa |
55925157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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