View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_126 (Length: 272)
Name: NF20151_low_126
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 48525831 - 48526057
Alignment:
| Q |
14 |
agagattgcaaaatttgagattaacttgatcttgtgagcctccctccaagtttgtttgataatataaaactaatatgtgggctatgggtataaatggtgt |
113 |
Q |
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| T |
48525831 |
agagattgcaaaatttgagattaacttgattttgtgagcctcc----aagtttgtttgataatataaaattaatatgtgggctatgggtata-------- |
48525918 |
T |
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| Q |
114 |
atatgtacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatca |
213 |
Q |
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| T |
48525919 |
-------cttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatca |
48526011 |
T |
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| Q |
214 |
ctgtataccgtgaacaagaaagatgtgcttgtagcatattgtgtat |
259 |
Q |
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| T |
48526012 |
ctgtataccgtgaacaagaaagatgtgcttgtagcatattgtgtat |
48526057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 119 - 259
Target Start/End: Original strand, 7221324 - 7221464
Alignment:
| Q |
119 |
tacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatcactgta |
218 |
Q |
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| T |
7221324 |
tacttacttgcattttggcaaaatcaaggagatgggctgaatcaaattctttgtttccacatttgaccttttgattatatttggcaagtaaatcactata |
7221423 |
T |
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| Q |
219 |
taccgtgaacaagaaagatgtgcttgtagcatattgtgtat |
259 |
Q |
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| T |
7221424 |
tacagtgaacaagaaagatgtaccggtggcatattgtgtat |
7221464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 50307021 - 50306881
Alignment:
| Q |
119 |
tacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatcactgta |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||| | || |||||||||||||||||||||||||| |
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| T |
50307021 |
tacttacttgttttttggcaaaatcaaggagatgagctgagtcaaattctttgttttcacatttgactatctgattatatttggcaagcaaatcactgta |
50306922 |
T |
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| Q |
219 |
taccgtgaacaagaaagatgtgcttgtagcatattgtgtat |
259 |
Q |
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||| || |||||||| |||||||| | ||||||||||||| |
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| T |
50306921 |
tacagtaaacaagaacgatgtgctgatggcatattgtgtat |
50306881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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