View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_127 (Length: 270)
Name: NF20151_low_127
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_127 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 35551226 - 35551466
Alignment:
| Q |
9 |
caatatatttttctttctggaatctttctttccattccgaattaacaagggtcaattcccaacctattcctaaaggaatctaggtgccagaaatatcaca |
108 |
Q |
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| T |
35551226 |
caatatctttttctttctggaatctttctttccattccgaattaacaagggtcaattcccaacctattcctaaaggaatctaggtgccagaaatatcaca |
35551325 |
T |
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| Q |
109 |
acgcgaggattgcagctgtttgttgcagcgaacatgtggaacgaccgtcgagattcaccaacgatttattagttccctttaccttaccaatgttctatat |
208 |
Q |
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| T |
35551326 |
acgtgaggattgcagca-------------aacatgtggaacgaccgtcgagattcaccaacgatttattagttccctttaccttaccaatgttctatat |
35551412 |
T |
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| Q |
209 |
tttcctgttttttccttcaatgtcatttttgtgcctatactaactcagaataat |
262 |
Q |
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| T |
35551413 |
tttcctgttttttccttcaatctcatttttgtgcctatactaacacagaataat |
35551466 |
T |
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Back To:
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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 19294137 - 19294194
Alignment:
| Q |
7 |
tccaatatatttttctttctggaatctttctttccattccgaattaacaagggtcaat |
64 |
Q |
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| T |
19294137 |
tccaagatctttttctttctggaatctttctttccattccgaattaacaagggccaat |
19294194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 19294223 - 19294326
Alignment:
| Q |
81 |
aaggaatctaggtgccagaaatatcacaacgcgaggattgcagctgtttgttgcagcgaacatgtggaacgaccgtcgagattcaccaacgatttattag |
180 |
Q |
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| T |
19294223 |
aagggatcgaggtgccacaaatatcacggcacgaggattgcagctgtttgctgcag---acgtgcggaacatccgtcgagattcgcccacaagttattag |
19294319 |
T |
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| Q |
181 |
ttccctt |
187 |
Q |
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||||||| |
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| T |
19294320 |
ttccctt |
19294326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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