View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_129 (Length: 266)
Name: NF20151_low_129
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_129 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 31030454 - 31030256
Alignment:
| Q |
18 |
gcacttgcaagtgaactagtttcttcaaattattccaaaacgaacgtgttaatagattagctatggcaagttatattttaagcataagttgtttatccat |
117 |
Q |
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| T |
31030454 |
gcacttgcaagtgaactagtttcttcaaattattccaaaacgaacgtgttaatagattagctatgccaagttatattttaagcataagttgtttatccat |
31030355 |
T |
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| Q |
118 |
tggtactggattccaaacgtgtttataagcataagtttttcgtcctttttgagttgtgtgatgatatatggtaacctgggattcgatgtggacaccactt |
217 |
Q |
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| T |
31030354 |
tagtactggattccaaacgtgtttataagcataagtttttcatcctttttcacttgtgtgatgatatatggtaacct-gaactcgatgtggacaccactt |
31030256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 31073976 - 31073875
Alignment:
| Q |
44 |
aaattattccaaaacgaacgtgttaatagattagctatggcaagttatattttaagcataagttgtttatccattggtactggattccaaacgtgtttat |
143 |
Q |
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| T |
31073976 |
aaattattccaaaactaacgtgttaatagattagttatggcaagttatattttaagcataagttgtttatgctttggtactagattccaaatgtgattat |
31073877 |
T |
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| Q |
144 |
aa |
145 |
Q |
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| T |
31073876 |
aa |
31073875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 31072532 - 31072450
Alignment:
| Q |
47 |
ttattccaaaacgaacgtgttaatagattagctatggcaagttatattttaagcataagttgtttatccattggtactggatt |
129 |
Q |
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| T |
31072532 |
ttattccaaaatgaacatgttaatagattagctattgcaaattttattttaagcataacttgtttatcttttggtagtggatt |
31072450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 31115313 - 31115394
Alignment:
| Q |
34 |
tagtttcttcaaattattccaaaacgaacgtgttaatagattagctatggcaagttatattttaagcataagttgtttatcc |
115 |
Q |
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||||||||| |||||||||||||| |||| | ||||||||||||||||| |||| | |||||||||||||| ||||||||| |
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| T |
31115313 |
tagtttctttaaattattccaaaatgaacattttaatagattagctatgacaagctttattttaagcataacatgtttatcc |
31115394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 31040369 - 31040286
Alignment:
| Q |
31 |
aactagtttcttcaaattattccaaaacgaacgtgttaatagattagctatggcaagttatattttaagcataagttgtttatc |
114 |
Q |
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| T |
31040369 |
aactagtttctttaaattattctaaattgaacgtgttaatagattatttatggcaggttttattgtaagcaaaacttgtttatc |
31040286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 31025761 - 31025703
Alignment:
| Q |
89 |
tatattttaagcataagttgtttatccattggtactggattccaaacgtgtttataagc |
147 |
Q |
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| T |
31025761 |
tataatttaagcattagttgtttatcctttggtactggattccgaaagtgattataagc |
31025703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 33559741 - 33559631
Alignment:
| Q |
18 |
gcacttgcaagtgaactagtttcttcaaattattccaaaacgaacgtgttaatagattagctatggcaagttatattttaagcataagttgtttatccat |
117 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| | |
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| T |
33559741 |
gcacatgcaagtgaactagtttctttaaattattccaaaatgaacgtgttaatagattagctatggcaaattttattttaagcataacttgtttatcttt |
33559642 |
T |
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| Q |
118 |
tggtactggat |
128 |
Q |
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||||| ||||| |
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| T |
33559641 |
tggtagtggat |
33559631 |
T |
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