View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_13 (Length: 574)
Name: NF20151_low_13
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 51487151 - 51487694
Alignment:
| Q |
16 |
caaaggttactgattgcaaacttcctctccctttggttatgaatttgatatacttgtgtttcttgatatactgctttgctctcaaaggcgttggtagatt |
115 |
Q |
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| T |
51487151 |
caaaggttactgattgcaaacttcctctccctttggttatgaatttgatatacttgtgtttcttgatatactgctttgctctcaaaggcattggtagatt |
51487250 |
T |
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| Q |
116 |
atatctcatgtacacattcttttgtccgattctctaggctcgcgatttaaaatttgcatttattgtgcgtgtttcatgaaattgatggatgtattcaatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51487251 |
atatctcatgtacacattcttttgtccgattctctaggctcgcgatttaaaatttgcatttattgtgtgtgtttcatgaaattgatggatgtattcaatt |
51487350 |
T |
|
| Q |
216 |
tacaggtttggagaaaccaatgatccagtgtaaacatatgttagaaatccaactgggaatgtacannnnnnnagttagttgattaggttcggtaatttca |
315 |
Q |
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| T |
51487351 |
tacaggtttggagaaaccaatgatccagtgtaaacatatgttagaaatccaactgggaatgtacatttttttagttagttgattacgttcggtaatctca |
51487450 |
T |
|
| Q |
316 |
tgttctttttagcaactgtaggaatggttccatattgtattttatctggcgcaccttgatttggtacatctgaaacattatttaccgacttgttttgtaa |
415 |
Q |
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| T |
51487451 |
tgttctttttagcaactgtaggaatggttccatattgtattttatctggcgcaccttgatttgggacatctgaaacattatttaccgacttgttttgtaa |
51487550 |
T |
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| Q |
416 |
tgctgtgtatttaagtgtccctaactcgtatacctagatgctagttcatgctcacatcaaattcttggtttgattcaagtttaccggcagatgcgattaa |
515 |
Q |
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| T |
51487551 |
tgctgtgtatttaagtgtccctaactcgtatacctagatgctagttcatgctcacatcaaattcttggtttgattcaagtttaccggcagatgcgattaa |
51487650 |
T |
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| Q |
516 |
tttccgaatgcatgatgatgagattatatgttgcccttaaattt |
559 |
Q |
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| T |
51487651 |
tttccgaatgcatgatgatgagattctatgttgcccttaaattt |
51487694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 30199224 - 30199163
Alignment:
| Q |
189 |
tcatgaaattgatggatgt-attcaatttacaggtttggagaaaccaatgatccagtgtaaa |
249 |
Q |
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|||||||||||||| ||| ||||||||||||||| |||||||||||| | |||| |||||| |
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| T |
30199224 |
tcatgaaattgatgtctgtcattcaatttacaggtctggagaaaccaaggttccaatgtaaa |
30199163 |
T |
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