View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_132 (Length: 261)
Name: NF20151_low_132
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_132 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 30809356 - 30809107
Alignment:
| Q |
10 |
attatacttaacaagtaatgaaaaaactctatcaattttgtcttcagaaacaaaaataagtaaattagttgtaaccttagcttaagtgatatctgaatca |
109 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30809356 |
attatacttaacaagtaatgaaaaaact--atcaattttgtcttcagaaataaaaataagtaaattagttgtaaccttagcttaagtgatatctgaatca |
30809259 |
T |
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| Q |
110 |
ctatcagaaaatgaagaataatcagcaaacaccttattttttcgtccataacaagaccaccgccacgcgcgccgcagtgttcgatgacatagtatacaag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
30809258 |
ctatcagaaaatgaagaataatcagcaaacaccttattttttcgtccataacaagaccaccgccatgcgcgccgcagcgttcgatgacatagtatacaag |
30809159 |
T |
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| Q |
210 |
atggtttgatgaaacaacatactggacaacacacacatagcaagcaacaact |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30809158 |
atggtttgatgaaacaacatactggacaacacacacatagcaagcaacaact |
30809107 |
T |
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