View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_137 (Length: 253)
Name: NF20151_low_137
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_137 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 9395678 - 9395479
Alignment:
| Q |
10 |
tcgaagaatatcttaacccacgtcctttttacaaaggaagtctatctcagaaactccttaagccaaaatgtaatacatgacttttgttagaataaaccca |
109 |
Q |
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| T |
9395678 |
tcgaaaaatatctttacccacgtcctttttacaaaggaattctatctctgaaactccctaagacaaaatgtaatacatgacttttgttagaataaaccca |
9395579 |
T |
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| Q |
110 |
ctgaaagtctatatccacacctttggaaaaaagacattcttttgttcttgcgataaagacaataccaatgggccaaattgcaattaacgtttaaataata |
209 |
Q |
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| T |
9395578 |
ctgaaggtctatatccacacctttggaaaaaagacattcttttgttctttcgatagagacaataccaatgggccaaattgcaattgacgtttaaataata |
9395479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 9395351 - 9395306
Alignment:
| Q |
208 |
taatatttttataatgtattaaattcttactctttggtccccatta |
253 |
Q |
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| T |
9395351 |
taatatttttataatgtattaaattcttactctttggtccccatta |
9395306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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