View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_138 (Length: 253)

Name: NF20151_low_138
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_138
NF20151_low_138
[»] chr8 (4 HSPs)
chr8 (36-92)||(10507392-10507448)
chr8 (90-144)||(8754138-8754192)
chr8 (36-92)||(8753980-8754036)
chr8 (90-143)||(10507236-10507289)
[»] chr6 (7 HSPs)
chr6 (36-92)||(13475232-13475288)
chr6 (43-92)||(14081789-14081838)
chr6 (210-251)||(13898041-13898082)
chr6 (210-251)||(13474838-13474879)
chr6 (100-144)||(14081904-14081948)
chr6 (213-251)||(13894984-13895022)
chr6 (210-247)||(14082786-14082823)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 10507448 - 10507392
Alignment:
Q  36 tgaaactggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 92  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10507448 tgaaactgaaacttcagtatgttatttacaatgcatgtgaaagcccactaagcttta 10507392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 8754138 - 8754192
Alignment:
Q  90 ttacagtaaaaaattcagtgaagtcatgtttctgttgatgaacgagttctcactg 144  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  8754138 ttacagcaaaaaattcagtgaagtcatgtttttgttgatgaatgagttcccactg 8754192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 8753980 - 8754036
Alignment:
Q  36 tgaaactggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 92  Q
    |||||||| |||||| |||||||||||||||||||| |||| |||||||||| ||||    
T  8753980 tgaaactgaaacttcagtatgttatttacaatgcatatgaatgcccactaagtttta 8754036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 10507289 - 10507236
Alignment:
Q  90 ttacagtaaaaaattcagtgaagtcatgtttctgttgatgaacgagttctcact 143  Q
    |||||||||||||||||||||| ||||||||  ||||||||| |||||| ||||    
T  10507289 ttacagtaaaaaattcagtgaaatcatgttttcgttgatgaatgagttcccact 10507236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 13475288 - 13475232
Alignment:
Q  36 tgaaactggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 92  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13475288 tgaaaccggaacttctgtatgttatttaaaatgcatgtgaaagcccactaagcttta 13475232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 14081789 - 14081838
Alignment:
Q  43 ggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 92  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14081789 ggaacttctgtatgttatttacaatgcatgtgaaagccctctaagcttta 14081838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 13898082 - 13898041
Alignment:
Q  210 cattcaagacattcttcctgttctttctgtcattcctgaggt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13898082 cattcaagacattcttcctgttctttctgtcattcctgaggt 13898041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 13474879 - 13474838
Alignment:
Q  210 cattcaagacattcttcctgttctttctgtcattcctgaggt 251  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  13474879 cattcaagacattcttcttgttctttctgtcattcctgaggt 13474838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 14081904 - 14081948
Alignment:
Q  100 aaattcagtgaagtcatgtttctgttgatgaacgagttctcactg 144  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  14081904 aaattcaatgaagtcatgtttctgttgatgaatgagttctcactg 14081948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 13895022 - 13894984
Alignment:
Q  213 tcaagacattcttcctgttctttctgtcattcctgaggt 251  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  13895022 tcaagacattcttcccgttctttctgccattcctgaggt 13894984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 14082786 - 14082823
Alignment:
Q  210 cattcaagacattcttcctgttctttctgtcattcctg 247  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  14082786 catttaagacattcttcctgttctttctctcattcctg 14082823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University