View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_142 (Length: 251)
Name: NF20151_low_142
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_142 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 40848776 - 40848534
Alignment:
| Q |
1 |
tcagtttatgattaatagacataacacggggaaaaggggaaagcaccaaatgagctatagagtgttttagaagaaaacggaagaaaatgatgagaatgat |
100 |
Q |
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| T |
40848776 |
tcagtttatgattaatagacataacaatgggaaaaggg-aaacagccaaatgagctatagagagttttagaaggaaacggaagaaaatgatgagaatgat |
40848678 |
T |
|
| Q |
101 |
tcaaatgtccctccagaacnnnnnnnnnnnnnnntcatttataccatgcaaatctacgaatgcaaatgaaaagttacgaaataattcaactaattagata |
200 |
Q |
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| T |
40848677 |
tcaaatgtccctccagaacaaaaacaaaaaaaaatcatttataccatgcaaatctacgaatgcaaatgaaaagttacgaaataattcaactaaatagata |
40848578 |
T |
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| Q |
201 |
cgttaccgtgaaagaagagtatattttttaaccatattcttgga |
244 |
Q |
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| T |
40848577 |
cgttaccgtgaaagaagagtatattttttaaccatcttgttgga |
40848534 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 8131902 - 8131948
Alignment:
| Q |
189 |
actaattagatacgttaccgtgaaagaagagtatattttttaaccat |
235 |
Q |
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| T |
8131902 |
actaattagatatgttaccgtgaaagtagagtatatttttgaaccat |
8131948 |
T |
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