View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_143 (Length: 250)
Name: NF20151_low_143
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_143 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 31841774 - 31841511
Alignment:
| Q |
10 |
gcagagagtaaaagtgtact------tattgaatattgatcatgaagcatcaaaacagcaaaatccaaaaacacataataatgagtatatgcatcatctt |
103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31841774 |
gcagagagtaaaagtgtactatgtcatattgaatattgatcatgaagcatcaaaacagcaaaatccaaaaacacataataatgaatatatgcatcatctt |
31841675 |
T |
|
| Q |
104 |
tgtcaatagcatgacaaaataacaagatcaatgagataatgaagtgtacatgagagtgcacgtgtgtacaattaat-----------------gtataat |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31841674 |
tgtcaatagcatgaaaaaataacaagatcaatgagataatgaagtgtacatgagagtgcacgtgtgtacaattaatgtatcggtcttacttatgtataat |
31841575 |
T |
|
| Q |
187 |
aatgcaacttatgatgtcacaattagagcatcactcgtattactatatctgaagactgaaacct |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31841574 |
aatgcaacttatgatgtcacaattagagcatcactcgtattactatatctgaagactgaaacct |
31841511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University