View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_147 (Length: 250)

Name: NF20151_low_147
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_147
NF20151_low_147
[»] chr7 (15 HSPs)
chr7 (13-250)||(4265218-4265456)
chr7 (115-250)||(4303525-4303660)
chr7 (21-113)||(18471756-18471848)
chr7 (187-250)||(4259847-4259910)
chr7 (188-250)||(4290267-4290329)
chr7 (30-104)||(8905643-8905717)
chr7 (188-250)||(4293635-4293697)
chr7 (23-104)||(4264979-4265060)
chr7 (37-104)||(8329047-8329113)
chr7 (37-104)||(18470142-18470209)
chr7 (37-104)||(25749396-25749463)
chr7 (23-104)||(25749315-25749395)
chr7 (37-104)||(8328198-8328265)
chr7 (41-104)||(8342668-8342731)
chr7 (44-93)||(23351231-23351280)
[»] chr3 (24 HSPs)
chr3 (12-104)||(27864802-27864894)
chr3 (15-104)||(24107154-24107243)
chr3 (13-104)||(38758850-38758940)
chr3 (21-104)||(16907933-16908016)
chr3 (37-104)||(31596753-31596820)
chr3 (27-104)||(27865054-27865131)
chr3 (13-104)||(54446257-54446349)
chr3 (27-104)||(3171492-3171569)
chr3 (17-104)||(46684101-46684188)
chr3 (27-104)||(24107407-24107484)
chr3 (46-104)||(18025883-18025941)
chr3 (27-104)||(19860494-19860571)
chr3 (31-104)||(38758611-38758684)
chr3 (43-104)||(46685537-46685598)
chr3 (12-87)||(21792357-21792433)
chr3 (13-104)||(3171731-3171819)
chr3 (27-96)||(21792228-21792297)
chr3 (12-104)||(14812430-14812522)
chr3 (58-104)||(11422382-11422428)
chr3 (27-104)||(54446023-54446100)
chr3 (37-83)||(18026117-18026163)
chr3 (54-113)||(30385175-30385234)
chr3 (54-104)||(18024568-18024618)
chr3 (54-104)||(42592403-42592453)
[»] scaffold0069 (2 HSPs)
scaffold0069 (13-104)||(19898-19989)
scaffold0069 (27-104)||(20155-20231)
[»] chr5 (15 HSPs)
chr5 (13-104)||(23322340-23322431)
chr5 (14-104)||(42792951-42793041)
chr5 (12-113)||(5841118-5841219)
chr5 (17-104)||(1501077-1501164)
chr5 (27-104)||(43183233-43183310)
chr5 (16-104)||(34634071-34634159)
chr5 (37-113)||(9379924-9380000)
chr5 (13-92)||(25088419-25088498)
chr5 (13-92)||(25146388-25146467)
chr5 (30-104)||(5840880-5840954)
chr5 (37-104)||(9380719-9380786)
chr5 (27-104)||(23322101-23322178)
chr5 (46-104)||(15933602-15933660)
chr5 (34-104)||(20244514-20244584)
chr5 (31-104)||(15933359-15933432)
[»] chr4 (33 HSPs)
chr4 (12-104)||(9268026-9268118)
chr4 (12-104)||(49028504-49028596)
chr4 (17-104)||(3990921-3991008)
chr4 (13-104)||(10468722-10468813)
chr4 (13-104)||(12585400-12585491)
chr4 (13-104)||(52677555-52677646)
chr4 (10-104)||(25225793-25225887)
chr4 (30-104)||(45667234-45667308)
chr4 (37-104)||(9450924-9450991)
chr4 (30-104)||(10286413-10286487)
chr4 (17-104)||(17931291-17931378)
chr4 (16-104)||(4439018-4439106)
chr4 (27-103)||(52677808-52677884)
chr4 (37-104)||(9449718-9449785)
chr4 (17-104)||(17932121-17932208)
chr4 (37-104)||(28450753-28450820)
chr4 (13-110)||(21038112-21038208)
chr4 (27-104)||(36098748-36098825)
chr4 (16-104)||(4437683-4437771)
chr4 (27-103)||(49028267-49028343)
chr4 (17-104)||(10202681-10202768)
chr4 (41-104)||(28451546-28451609)
chr4 (17-104)||(53892254-53892341)
chr4 (47-104)||(12315858-12315915)
chr4 (12-85)||(16067346-16067419)
chr4 (30-104)||(12585161-12585235)
chr4 (31-104)||(21038374-21038445)
chr4 (27-104)||(10468483-10468560)
chr4 (37-104)||(21325696-21325763)
chr4 (27-89)||(16067580-16067642)
chr4 (12-55)||(622109-622152)
chr4 (37-104)||(622323-622390)
chr4 (50-93)||(35348809-35348852)
[»] chr2 (13 HSPs)
chr2 (12-104)||(38695129-38695221)
chr2 (16-104)||(18166636-18166724)
chr2 (13-114)||(42962761-42962862)
chr2 (16-104)||(4410620-4410708)
chr2 (37-104)||(14159209-14159276)
chr2 (28-104)||(42963025-42963101)
chr2 (37-104)||(14160422-14160489)
chr2 (41-104)||(4733307-4733370)
chr2 (37-104)||(4734218-4734285)
chr2 (27-113)||(18171336-18171422)
chr2 (27-103)||(38694892-38694968)
chr2 (17-103)||(4409164-4409250)
chr2 (54-104)||(39110075-39110125)
[»] scaffold0008 (2 HSPs)
scaffold0008 (13-104)||(266862-266953)
scaffold0008 (27-112)||(266616-266701)
[»] chr6 (10 HSPs)
chr6 (12-104)||(3659193-3659284)
chr6 (12-104)||(5367656-5367747)
chr6 (37-104)||(8286791-8286858)
chr6 (17-104)||(8287411-8287498)
chr6 (30-104)||(3658955-3659029)
chr6 (74-104)||(3720053-3720083)
chr6 (54-104)||(9899563-9899613)
chr6 (44-93)||(8286566-8286615)
chr6 (75-104)||(13119207-13119236)
chr6 (28-104)||(28944248-28944324)
[»] chr8 (9 HSPs)
chr8 (14-104)||(18203299-18203389)
chr8 (27-104)||(30905982-30906059)
chr8 (41-104)||(10536003-10536066)
chr8 (37-104)||(10536793-10536860)
chr8 (41-109)||(32539455-32539523)
chr8 (20-113)||(30905390-30905483)
chr8 (16-92)||(5426959-5427035)
chr8 (44-93)||(15304207-15304256)
chr8 (44-93)||(15484576-15484625)
[»] chr1 (9 HSPs)
chr1 (13-104)||(37499414-37499505)
chr1 (37-104)||(9114822-9114889)
chr1 (37-104)||(14903809-14903876)
chr1 (41-104)||(14904601-14904664)
chr1 (37-104)||(17690937-17691004)
chr1 (21-84)||(9116047-9116110)
chr1 (37-104)||(17689739-17689805)
chr1 (72-104)||(37499179-37499211)
chr1 (30-104)||(30335231-30335304)
[»] scaffold0006 (2 HSPs)
scaffold0006 (12-104)||(93635-93726)
scaffold0006 (30-84)||(93890-93944)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 4265218 - 4265456
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa-ccttaaa 111  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||   |    
T  4265218 atactaacttaatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaacttaagggaccaaatcattaattaagcctccga 4265317  T
Q  112 aacacaagaataaaaatcaactctgtcttaccataatcttcaattttttcaacaaccaaatttctaagaaatgtctaaaatcatagaaattttcaatgta 211  Q
    || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4265318 aaaacaagaataaaaaacaactctgtcttaccatattcttcaattttttcaacaaccaaatttctaagaaatgtctaaaatcatagaaattttcaatgta 4265417  T
Q  212 tcaccatcttcacaagaagaacttccttcagaaacatca 250  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  4265418 tcaccatcttcacaggaagaacttcctttagaaacatca 4265456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 4303660 - 4303525
Alignment:
Q  115 acaagaataaaaatcaactctgtcttaccataatcttcaattttttcaacaaccaaatttctaagaaatgtctaaaatcatagaaattttcaatgtatca 214  Q
    ||||||||||||  ||| |||||||||||||  |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  4303660 acaagaataaaatacaattctgtcttaccatcttcttcaattttttctacaaccaaatttctaaaaaatgtctaaaattatagaaattttcaatgtatca 4303561  T
Q  215 ccatcttcacaagaagaacttccttcagaaacatca 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  4303560 ccatcttcacaagaagaacttccttcagaaacatca 4303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 18471756 - 18471848
Alignment:
Q  21 ttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaaa 113  Q
    ||||| ||||||| ||||| |||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| ||| | ||||||    
T  18471756 ttaagggaccaaaatataatgttaataacttatgagaccaaaatgtaaccaacagataacttaagggaccaaatcattaactaagcctaaaaa 18471848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 4259847 - 4259910
Alignment:
Q  187 taaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatca 250  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  4259847 taaaatcatagaaattttcaatgtagcaccatcttcacaagtagaactaccttcagaaacatca 4259910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 4290329 - 4290267
Alignment:
Q  188 aaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatca 250  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||    
T  4290329 aaaatcatagaaattttcaatgtagcaccatcatcacaagtagaactaccttcagaaacatca 4290267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 8905717 - 8905643
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| |||| ||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| |||||    
T  8905717 caaattgtaacattaataacttatgagaccaaaatgtaaccaacaaataacttaagagaccaaatcattgattaa 8905643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 4293697 - 4293635
Alignment:
Q  188 aaaatcatagaaattttcaatgtatcaccatcttcacaagaagaacttccttcagaaacatca 250  Q
    ||||||||||||||||||||||||  |||||| ||||||| |||||| |||||||||||||||    
T  4293697 aaaatcatagaaattttcaatgtagaaccatcatcacaagtagaactaccttcagaaacatca 4293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 4265060 - 4264979
Alignment:
Q  23 aagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||| ||| |||||||||||||| ||| ||||||  ||| | |||||||||||  ||||| ||||||||||||    
T  4265060 aagagaccaaattgtaatgttaataacttatgagactaaaatgtcaccaaaaaataacttaaaagaccacatcattaattaa 4264979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 8329047 - 8329113
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||| || |||||||||| |||| |||||||||||||  |||||| |||||||||||    
T  8329047 taacgttaataacttttgagaccaaaatgtaaccaacaaataacttaa-agaccaattcattaattaa 8329113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 18470209 - 18470142
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| ||||||||||||| | |||||||| |||| |||||||| |||||| || ||||||||||||||    
T  18470209 taacattaataacttatgtggccaaaatgtaaccaacaaataatttaaggcacaaaatcattaattaa 18470142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 25749396 - 25749463
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||| ||| ||| || |||| ||||||||||||||||| || || |||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaataacttaagggaacacataattaattaa 25749463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 25749395 - 25749315
Alignment:
Q  23 aagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| |||||||| ||||||||||||||||||| || |||||  | || || ||||||| |||||||| |||||||||||||    
T  25749395 aagaaaccaaattgtaacgttaataacttatggaactaaaatatagccaac-aataactaaagggaccgaatcattaattaa 25749315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 8328265 - 8328198
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||| || |||||||||  |||  | ||||||||||||||||| | |||||||||||    
T  8328265 taacgttaataacttgtgagaccaaaatctaactaataaataacttaagggaccgattcattaattaa 8328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 8342668 - 8342731
Alignment:
Q  41 gttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| ||||||||| ||||||| || |||| | ||||||||||| ||||||| |||||||||||    
T  8342668 gttagtaacttatgagaccaaagtgtaaccaaaaaataacttaatggaccaattcattaattaa 8342731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 23351231 - 23351280
Alignment:
Q  44 aataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaa 93  Q
    ||||| ||| ||||||||||||||||| | |||||| |||||||||||||    
T  23351231 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 23351280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 27864894 - 27864802
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  27864894 aatactaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttacgggaccaaatcattaattaa 27864802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 24107243 - 24107154
Alignment:
Q  15 actaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  24107243 actaacttaagtgaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataactcaagggaccaaatcattaattaa 24107154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 38758850 - 38758940
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  38758850 atactaacttagg-gaccaaattataacgttgataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 38758940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 16908016 - 16907933
Alignment:
Q  21 ttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||| |||||||  |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  16908016 ttaagggaccaaaacataacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaa 16907933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 31596753 - 31596820
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  31596753 taacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 31596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 27865054 - 27865131
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||    
T  27865054 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 27865131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 54446257 - 54446349
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggacc-aaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||| |||||||||| ||| ||||||||||||| ||||| |||||| |||  |||||||||||||||||||||||||||||||||    
T  54446257 atactaacttaaaagaccaaattgtaatgttaataacttataggaccaaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 54446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 3171569 - 3171492
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||| ||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||    
T  3171569 gaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 3171492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 46684188 - 46684101
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||||   ||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||    
T  46684188 taacttaagggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaatcattaattaa 46684101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 24107407 - 24107484
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| |||| |||||||| |||||| ||||||||||||    
T  24107407 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaattaa 24107484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 18025941 - 18025883
Alignment:
Q  46 taacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||    
T  18025941 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaa 18025883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 19860571 - 19860494
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| | |||||||||||  ||||| ||||||||||||    
T  19860571 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaattaa 19860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 38758684 - 38758611
Alignment:
Q  31 aaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||| | |||| |||||||    
T  38758684 aaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaacatcactaattaa 38758611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 46685537 - 46685598
Alignment:
Q  43 taataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||    
T  46685537 taataacttatgggaccaaaatgtaaccaataaataatttaagggaccaaatcattaattaa 46685598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 21792357 - 21792433
Alignment:
Q  12 aatactaacttaag-agaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaaggg 87  Q
    |||||||||||||| |||||||||| ||||||||||||||||  ||||||||||| || | ||||||||||||||||    
T  21792357 aatactaacttaaggagaccaaattgtaacgttaataacttagaggaccaaaatgtaaacaacaaataacttaaggg 21792433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 3171731 - 3171819
Alignment:
Q  13 atactaacttaagagaccaaatta-taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||| |||||||||  |||| |||||||    |||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  3171731 atactaacttaagggaccaaatttgtaacattaataa----tgggatgaaaatgtaaccgacaaataacttaagggaccaaatcattaattaa 3171819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 21792297 - 21792228
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatca 96  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||    
T  21792297 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggaccacatca 21792228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 14812522 - 14812430
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||| ||  ||||| ||||||||||||||||||||||||||||| |||  | |||||||||||  || ||||||||| |||||    
T  14812522 aatactaacctaagggagaaaattgtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaaatgatcaaatcattgattaa 14812430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 11422428 - 11422382
Alignment:
Q  58 ccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  11422428 ccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 11422382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 54446100 - 54446023
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| ||||||||||||||||| |||  |||||| || | ||||||||||| || ||||| ||||||||||||    
T  54446100 gaccaaattgtaacgttaataacttataggattaaaatgtaatcaacaaataactttagagaccacatcattaattaa 54446023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 18026117 - 18026163
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataactta 83  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||    
T  18026117 taacgttaataacttatgggactaaaatgtaaccaacaaataactta 18026163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 30385234 - 30385175
Alignment:
Q  54 gggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaaa 113  Q
    ||||||||||||||||| | |||||| |||||||||||||| | ||||||| | ||||||    
T  30385234 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaagcctaaaaa 30385175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 18024618 - 18024568
Alignment:
Q  54 gggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||| | |||||| |||||||||||||| | |||||||    
T  18024618 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaa 18024568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 42592453 - 42592403
Alignment:
Q  54 gggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||| | |||||| |||||||||||||| | |||||||    
T  42592453 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaa 42592403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 19989 - 19898
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  19989 atactaacttaagggaccaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 19898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 20155 - 20231
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||||||||| |||||| |  |||||  |||| ||||||||||||| |||||| ||||||||||||    
T  20155 gaccaaattgtaacgttaataaattatggaattaaaatataaccaacaaataacttaa-ggaccacatcattaattaa 20231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 23322340 - 23322431
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  23322340 atactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 23322431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 42793041 - 42792951
Alignment:
Q  14 tactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  42793041 tactaacttaagggaccaaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaa 42792951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 5841118 - 5841219
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaa 111  Q
    |||||||||||||   |||||||| |||||||||||| |||||||||||||||| |||| |||||||| ||||| |||||||||||||||||| | ||||    
T  5841118 aatactaacttaaagaaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaataagttaagagaccaaatcattaattaagcctaaa 5841217  T
Q  112 aa 113  Q
    ||    
T  5841218 aa 5841219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 1501077 - 1501164
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| ||||||| | |||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||    
T  1501077 taacttaagggaccaaaatgtaacgttaataatttatgggaccaaaatgaaaccaataaataacttaagggatcaaatgattaattaa 1501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 43183310 - 43183233
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| ||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  43183310 gaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaa 43183233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 34634159 - 34634071
Alignment:
Q  16 ctaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||  ||||||| | |||||||||||||||||||||||||| || |||| ||||||||||||| |||||| ||||||||||||    
T  34634159 ctaacttaatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaaggaccacatcattaattaa 34634071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 9380000 - 9379924
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaaa 113  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||| ||||||||||| | ||||||    
T  9380000 taacgttaataacttgtggaaccaaaatgtaaccaacaaataacttaagggaccaattcattaattaagcctaaaaa 9379924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 25088498 - 25088419
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaa 92  Q
    |||||||| |||| ||||||||| |||||||||||| ||||| |||||||||| |||| |||||||||||| ||||||||    
T  25088498 atactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataacttacgggaccaa 25088419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 25146467 - 25146388
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaa 92  Q
    |||||||| |||| ||||||||| |||||||||||| ||||| |||||||||| |||| |||||||||||| ||||||||    
T  25146467 atactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataacttacgggaccaa 25146388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 5840954 - 5840880
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| ||||||||||||||||||| || |||||  |||| |||||||||||||||||||| ||||||||||||    
T  5840954 caaattgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaattaa 5840880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 9380719 - 9380786
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| |||||||||||||||| ||||||| |||| ||||||||||||||||| ||| |||||||||||    
T  9380719 taacattaataacttatgggatcaaaatgtaaccaacaaataacttaagggatcaattcattaattaa 9380786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 23322178 - 23322101
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||| ||||||||||||||||| |||||| |||| |||||||||||||  ||| | ||||||||||||    
T  23322178 gaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaattaa 23322101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 15933602 - 15933660
Alignment:
Q  46 taacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||| ||||| |||||| |||| |||||||||||||||||||||||||| ||||||    
T  15933602 taacttaagggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaa 15933660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 20244514 - 20244584
Alignment:
Q  34 ttataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| |||||||| |||||||||||||||| |||| |||||||| |||||  || ||||||||||||||    
T  20244514 ttataatgttaataatttatgggaccaaaatgtaaccaacaaataatttaagtaacaaaatcattaattaa 20244584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 15933432 - 15933359
Alignment:
Q  31 aaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||| |||||||||||||||||| ||| |||||  |||| ||||||||  |||||||||| |||||| |||||    
T  15933432 aaattgtaacgttaataacttatgagactaaaatataaccaacaaataatataagggaccacatcattgattaa 15933359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 9268118 - 9268026
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  9268118 aatactaacttaagggaccaaattgtaactttaataacttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaa 9268026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 49028504 - 49028596
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  49028504 aatactaacttaagggaccaaattgtaacattaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaa 49028596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 3990921 - 3991008
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |||||||    
T  3990921 taacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaacttaagggaccaaatcaataattaa 3991008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 10468722 - 10468813
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||  ||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  10468722 atactaacttaacggaccaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatgattaattaa 10468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 12585400 - 12585491
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||| ||||||||| ||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||||    
T  12585400 atactaacttaagggaccaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 12585491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 52677646 - 52677555
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||    
T  52677646 atactaacttaatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaagggaccaaataattaattaa 52677555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 25225887 - 25225793
Alignment:
Q  10 ataatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| ||||||||||| ||| ||||| |||||||||||||||||| |||||||||  |||| |||||||||||||||||||||||||||||||||    
T  25225887 ataagactaacttaagcgacaaaattgtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 45667308 - 45667234
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  45667308 caaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 45667234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 9450924 - 9450991
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  9450924 taacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaa 9450991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 10286487 - 10286413
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| |||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  10286487 caaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 10286413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 17931378 - 17931291
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||  || |||||||||||||||||||||||||| || |||| | ||||||||||||||||||| |||||||||||    
T  17931378 taacttaagggaccattttgtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaa 17931291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 4439018 - 4439106
Alignment:
Q  16 ctaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||   |||||||||||||||||| ||||||| || |||| ||||||||||| ||||||||  |||||||||||    
T  4439018 ctaacttaagagaccaaaacgtaacgttaataacttatgagaccaaattgtaaccaacaaataactttagggaccacgtcattaattaa 4439106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 52677808 - 52677884
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaatta 103  Q
    |||||||||||||| ||||||||||||| ||| |||||| |||| ||||||||| |||||||||| |||||||||||    
T  52677808 gaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaatta 52677884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 9449785 - 9449718
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  9449785 taacgttaataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaa 9449718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 17932121 - 17932208
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||  || |||| ||||||||||||||||||||| || |||| | ||||||||||||||||||| |||||||||||    
T  17932121 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaa 17932208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 28450820 - 28450753
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| |||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  28450820 taacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaa 28450753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 21038208 - 21038112
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaa 110  Q
    ||||||||||||  ||||||||| ||||||||||||||||| | ||||||||  || | ||||| ||||||| |||||||||||||||||| ||||||    
T  21038208 atactaacttaaaggaccaaattgtaacgttaataacttattgaaccaaaatataatcaacaaacaacttaa-ggaccaaatcattaattatccttaa 21038112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 36098825 - 36098748
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||||||| |||||| || |||||  |||| |||||||||||||| ||||| ||||||||||||    
T  36098825 gaccaaattataacgttaataatttatggaactaaaatataaccaacaaataacttaagagaccacatcattaattaa 36098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 4437771 - 4437683
Alignment:
Q  16 ctaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||  |||||||   |||||||||||||||||||||||||| || |||| |||||||| |||| |||||||| ||||||||||    
T  4437771 ctaacttaaaggaccaaaacgtaacgttaataacttatgggaccaaattgtaaccaacaaataatttaatggaccaaaccattaattaa 4437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 49028343 - 49028267
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaatta 103  Q
    ||||||||  |||||||||||| ||||||||| |||||| |||| |||||||||||||||||||| ||||| |||||    
T  49028343 gaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 49028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 10202768 - 10202681
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||  | |||||| |||||||||||| |||||||||||||||| ||||  ||||||| |||| ||| |||||||||||||||    
T  10202768 taacttaaggcatcaaattgtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaa 10202681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 28451546 - 28451609
Alignment:
Q  41 gttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||| |||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  28451546 gttaatatcttatgagaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 28451609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 53892341 - 53892254
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||| ||||||  |||| ||||||||||||||||||||| || || |||| | ||||||||||||  |||||||||||||||||    
T  53892341 taacttaatagaccattttattacgttaataacttatgggacccaattgtaacctataaataacttaagaaaccaaatcattaattaa 53892254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 12315915 - 12315858
Alignment:
Q  47 aacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||    
T  12315915 aacttatgggaccaaattgtaacctacaaataacttaaaggaccaaatcattaattaa 12315858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 16067419 - 16067346
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaag 85  Q
    ||||||||||||| |||||||||| |||||||||||| |||| | || |||||| |||| ||||||||||||||    
T  16067419 aatactaacttaaaagaccaaattgtaacgttaataatttatagaactaaaatgtaaccaacaaataacttaag 16067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 12585235 - 12585161
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| ||| |||||||||||||| ||| |||||| || | ||||||||||||||||||||  |||||||||||    
T  12585235 caaattgtaatgttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaattaa 12585161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 21038374 - 21038445
Alignment:
Q  31 aaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||  |||| |||||| ||||  |||||||||||||||| || ||||||||||||    
T  21038374 aaattataacgttaataactta--ggactaaaatgtaaccagcaaataacttaagggatcacatcattaattaa 21038445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 10468560 - 10468483
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| ||||||||| ||||||   ||| |||||| |||| |||||||||||||||||||| |||| |||||||    
T  10468560 gaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaacaaataacttaagggaccacatcagtaattaa 10468483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 21325696 - 21325763
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||| ||| |||||| |||| |||||||| ||||| || |||||||||||||||    
T  21325696 taacgttaataactaatgtgactaaaatgtaaccaacaaataatttaagagatcaaatcattaattaa 21325763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 16067580 - 16067642
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggac 89  Q
    ||||||||| |||||||||||||||||| ||| |||||| |||| |||||||| |||| ||||    
T  16067580 gaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaaaggac 16067642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 622152 - 622109
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgg 55  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||    
T  622152 aatactaatttaagggaccaaattataacgttaataacgtatgg 622109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 622323 - 622390
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| |||||||| ||| || | |||||| |||| ||||||||||||||||| || ||||||||||||    
T  622323 taacattaataacatataggtctaaaatgtaaccaacaaataacttaagggatcacatcattaattaa 622390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 35348852 - 35348809
Alignment:
Q  50 ttatgggaccaaaatgaaaccgacaaataacttaagggaccaaa 93  Q
    ||||||||||||||||||| | |||||| |||||||||||||||    
T  35348852 ttatgggaccaaaatgaaaacaacaaattacttaagggaccaaa 35348809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 38695129 - 38695221
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  38695129 aatactaacttaagggaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaa 38695221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 18166724 - 18166636
Alignment:
Q  16 ctaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||| ||||||||| |||||||||||||||||| || ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  18166724 ctaacttaagggaccaaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaa 18166636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 42962862 - 42962761
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaa 112  Q
    ||||||||||||| ||||||||| |||||||| | ||||||| || ||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||    
T  42962862 atactaacttaagggaccaaattgtaacgttagtcacttatgagatcaaaatgcaaccaacaaataacctaagggaccaaatcattaattaagcctaaaa 42962763  T
Q  113 ac 114  Q
    ||    
T  42962762 ac 42962761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 4410620 - 4410708
Alignment:
Q  16 ctaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||| ||||||| | || ||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  4410620 ctaacttaagggaccaaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataacttaagggaccaaatcattaattaa 4410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 14159276 - 14159209
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  14159276 taacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaa 14159209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 42963025 - 42963101
Alignment:
Q  28 accaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||| |||||||||||||||||| ||| |||||| |||| |||||||||||||||||||| ||||||||||||    
T  42963025 accaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatcattaattaa 42963101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 14160422 - 14160489
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  14160422 taacgttaataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaa 14160489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 4733370 - 4733307
Alignment:
Q  41 gttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||    
T  4733370 gttaataacttatgggaccaaaatgtaaccaacaaataatttaagggatcaaatcattaattaa 4733307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 4734218 - 4734285
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||| |||||||||||    
T  4734218 taacgttaataacttataggatcaaaatgtaaccaacaaataacttaagggaccaattcattaattaa 4734285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 18171336 - 18171422
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaaa 113  Q
    ||||||||| |||  ||||||||||||||||| |||||| |||| |||||||| ||||||||||| |||||||||||| | ||||||    
T  18171336 gaccaaattgtaattttaataacttatgggactaaaatgtaaccaacaaataatttaagggaccatatcattaattaagcctaaaaa 18171422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 38694968 - 38694892
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaatta 103  Q
    ||||||||  |||||||||||| ||||||||| |||||| |||| |||||||||||||||||||| ||||| |||||    
T  38694968 gaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 38694892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 4409250 - 4409164
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaatta 103  Q
    ||||||||| |||||||   |||||||||||||||||| ||||||| || |||  |||||||| ||||| |||||||||||||||||    
T  4409250 taacttaagggaccaaaacgtaacgttaataacttatgagaccaaattgtaactaacaaataatttaagagaccaaatcattaatta 4409164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 39110125 - 39110075
Alignment:
Q  54 gggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||| | |||||| |||||||||||||| | |||||||    
T  39110125 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaa 39110075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 266862 - 266953
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  266862 atactaacttaagggaccaaattataaggttaataacttatgtgaccaaaatgtaaccaacaaataacttaaaggaccaaatcattaattaa 266953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 266701 - 266616
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaa 112  Q
    |||||||||||||| |||||||||||| |||| |||||| |||| ||||||||||||||| |||| |||| | ||||||| |||||    
T  266701 gaccaaattataacattaataacttatcggactaaaatgtaaccaacaaataacttaaggaaccacatcactgattaaccctaaaa 266616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 3659193 - 3659284
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  3659193 aatactaacttaagggaccaaattgtaa-gttaataacttatgggaccaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 3659284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 5367656 - 5367747
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  5367656 aatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaa-ggaccaaatcattaattaa 5367747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 8286858 - 8286791
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||| ||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  8286858 taacgttaattacttaagggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 8286791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 8287411 - 8287498
Alignment:
Q  17 taacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| ||||||| | ||||||| |  | |||  |||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  8287411 taacttaagggaccaaaatgtaacgttgaatagttaaaggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 8287498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 3659029 - 3658955
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| |||| ||||||||||||||||| ||| || |||| | |||||||||||||||||| |||| |||||||    
T  3659029 caaattgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaattaa 3658955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 104
Target Start/End: Complemental strand, 3720083 - 3720053
Alignment:
Q  74 aaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||||||||||||||||    
T  3720083 aaataacttaagggaccaaatcattaattaa 3720053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 9899613 - 9899563
Alignment:
Q  54 gggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||| | |||||| |||||||||||||| | |||||||    
T  9899613 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaa 9899563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 8286566 - 8286615
Alignment:
Q  44 aataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaa 93  Q
    ||||| ||| ||||||||||||||||| | |||||| |||||||||||||    
T  8286566 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 8286615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 13119207 - 13119236
Alignment:
Q  75 aataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||||||||    
T  13119207 aataacttaagggaccaaatcattaattaa 13119236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 28944324 - 28944248
Alignment:
Q  28 accaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||| |||| ||||||||||| | ||  |||||| |||| |||||| |||||||||| || || |||||||||    
T  28944324 accaaattgtaacattaataacttacgagattaaaatgtaaccaacaaatgacttaagggagcagatgattaattaa 28944248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 18203299 - 18203389
Alignment:
Q  14 tactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||||  |||| | |||||||||||||||||||||||||||||||    
T  18203299 tactaacttaagagactaaattgtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaa 18203389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 30905982 - 30906059
Alignment:
Q  27 gaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||| ||||| ||||||||||||    
T  30905982 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaattaa 30906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 10536066 - 10536003
Alignment:
Q  41 gttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  10536066 gttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 10536003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 10536793 - 10536860
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| |||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  10536793 taacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaa 10536860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 32539455 - 32539523
Alignment:
Q  41 gttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaacctta 109  Q
    |||||||||||||| ||  |||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  32539455 gttaataacttatgagattaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagctta 32539523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 30905483 - 30905390
Alignment:
Q  20 cttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaaccttaaaaa 113  Q
    |||||| ||||||||| |||||||||||| |||| | |  |||||  |||| |||||||| |||||||||||||||||||||||| | ||||||    
T  30905483 cttaagggaccaaattgtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaagcgtaaaaa 30905390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 5426959 - 5427035
Alignment:
Q  16 ctaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaa 92  Q
    |||||||||  ||||||| |||||||||||||| | ||  || |||||||||| |||||||||| |||||| |||||    
T  5426959 ctaacttaatggaccaaaatataacgttaataagtaatatgatcaaaatgaaaacgacaaataagttaaggcaccaa 5427035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 15304207 - 15304256
Alignment:
Q  44 aataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaa 93  Q
    ||||| ||| ||||||||||||||||| | |||||| |||||||||||||    
T  15304207 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 15304256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 15484576 - 15484625
Alignment:
Q  44 aataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaa 93  Q
    ||||| ||| ||||||||||||||||| | |||||| |||||||||||||    
T  15484576 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 15484625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 37499414 - 37499505
Alignment:
Q  13 atactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||| |||||||||||||| |  |||||||||||||||    
T  37499414 atactaacttaagagacgaaattataacattaataacttatgagaccaaaatgtaaccaacaaataacttaagaggtcaaatcattaattaa 37499505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 9114889 - 9114822
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  9114889 taacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggacaaaatcattaattaa 9114822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 14903876 - 14903809
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  14903876 taacgttaataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 14903809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 14904601 - 14904664
Alignment:
Q  41 gttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  14904601 gttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaa 14904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 17690937 - 17691004
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||||||||| ||   |||| |||||||||||||||||||||||||||||||||    
T  17690937 taacgttaataacttatgggaccagaacataaccaacaaataacttaagggaccaaatcattaattaa 17691004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 9116047 - 9116110
Alignment:
Q  21 ttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaa 84  Q
    |||||||||||||    ||||||||||||||||| |||||||||| |||| |||||||||||||    
T  9116047 ttaagagaccaaaacgaaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaa 9116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 17689805 - 17689739
Alignment:
Q  37 taacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    ||||||| |||||||||| |||||||  | || | |||||||||||||||||||||||||||||||||    
T  17689805 taacgtttataacttatgagaccaaac-gtaatcaacaaataacttaagggaccaaatcattaattaa 17689739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 37499211 - 37499179
Alignment:
Q  72 acaaataacttaagggaccaaatcattaattaa 104  Q
    |||||||||||||||||||||||||||||||||    
T  37499211 acaaataacttaagggaccaaatcattaattaa 37499179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 30335231 - 30335304
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||||| |||||||||||||||||| ||| ||| || ||   ||||||||||||| |||||| ||||||||||||    
T  30335231 caaattgtaacgttaataacttatgagactaaagtgtaagtaacaaataacttaa-ggaccacatcattaattaa 30335304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 93726 - 93635
Alignment:
Q  12 aatactaacttaagagaccaaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaagggaccaaatcattaattaa 104  Q
    |||| ||||||||| ||| ||||| |||||||||||| |||||||||||||||| |||  ||||||||||||| ||| |||||||||||||||    
T  93726 aatagtaacttaagggactaaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataacttaa-ggatcaaatcattaattaa 93635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 93890 - 93944
Alignment:
Q  30 caaattataacgttaataacttatgggaccaaaatgaaaccgacaaataacttaa 84  Q
    |||||| |||||||||||| ||||||||| |||||| |||| |||||||| ||||    
T  93890 caaattgtaacgttaataatttatgggactaaaatgtaaccaacaaataaattaa 93944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University