View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_148 (Length: 249)
Name: NF20151_low_148
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_148 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 17514551 - 17514765
Alignment:
| Q |
14 |
aatatgagtacttgctgaatccaaagtaaaataacagatgaacaaagttaaaaattgcaacaaaatcaactaaatatttaagacaaaaaattaaagttta |
113 |
Q |
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| T |
17514551 |
aatatgagtacttcctgaatccaaagtaaaataacagatgaataaagataaaaattgaaacaaaatcaactaaatctttgagccataaaattgaagttta |
17514650 |
T |
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| Q |
114 |
ggtcttgtaattgatattcctgattttattgcttcccatcattgttgttgctacctgtgatatttccattgttattaccttctgtgacattgttcccatt |
213 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
17514651 |
ggtcttgtaattgatattcctgattttattccttcccatcattgttggtgctacctgtggtatttccattgttattacctt-tgtgacattgttcccatt |
17514749 |
T |
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| Q |
214 |
attattatcagttgca |
229 |
Q |
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||||||||||| |||| |
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| T |
17514750 |
attattatcagctgca |
17514765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 17529701 - 17529849
Alignment:
| Q |
14 |
aatatgagtacttgctgaatccaaagtaaaataacagatgaacaaagttaaaaattgcaacaaaatcaactaaatatttaagacaaaaaattaaagttta |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| || ||||||||| |||||| |
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| T |
17529701 |
aatatgagtacttcctgaatccaaagtaaaataacagatgaacaaacaaaaaaatggcaacaaaatcaactaaatctttgagccaaaaaattgtagttta |
17529800 |
T |
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| Q |
114 |
ggtcttgtaattgatattcctgattttattgcttcccatcattgttgtt |
162 |
Q |
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| T |
17529801 |
ggtcttgtaattggtattcctgattttattccttcccatcattgttgtt |
17529849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 16856277 - 16856469
Alignment:
| Q |
14 |
aatatgagtacttgctgaatccaaagtaaaataacagatgaacaaagttaaaaattgcaacaaaatcaactaaatatttaagacaaaaaattaaagttta |
113 |
Q |
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|||||||||| | |||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| ||| || ||||||||| ||||||| |
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| T |
16856277 |
aatatgagtaatacctgaatccaaagtaaaataacaattgaacaaaaa-aaaaatggcaacaaaat-aactaaatctttgagccaaaaaattgaagttta |
16856374 |
T |
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| Q |
114 |
ggtcttgtaattgatat----tcctgattttattgcttcccatcattgttgttgctacctgtgatatttccattgttattaccttctgtgacatt |
204 |
Q |
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| T |
16856375 |
gctcttgtgattgatatatattcctggttttatttcttcccatcattgttgctgctacctgtgatgtttccatttctattgtcttctgcgacatt |
16856469 |
T |
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