View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_150 (Length: 249)
Name: NF20151_low_150
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_150 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2578186 - 2578425
Alignment:
| Q |
1 |
caaatatatacttgcaagtcctagttaatgacgttcaaaattgtgttcagcggatgattaacaagttgcgacttgcgagaccttgttatattcattaatc |
100 |
Q |
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| T |
2578186 |
caaatatatattttcaagtcgtggttaatgacgttaaaaattgtgttcagcggatgattaacaagttgcgacttgcaagaccttgttatattcattaatc |
2578285 |
T |
|
| Q |
101 |
aataaccgaacataattaacaacatatttaaactgcgttaaccattta-tttgttatcgtattttgatgacaaatttgtgtgtcaaaatatcattcctcc |
199 |
Q |
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| T |
2578286 |
attaaccgaacataattaaccacatatttaaactgcgtaaaccatctagtttgttatcgcattttgatgacaaatttgtttgtcaaaatatcattcctcc |
2578385 |
T |
|
| Q |
200 |
tatcaataaaatgaaatattttagtaatacctgtgttcat |
239 |
Q |
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| T |
2578386 |
tatcaataaaatgaaatattttagtaatacctgtgttcat |
2578425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 2577970 - 2578104
Alignment:
| Q |
43 |
gtgttcagcggatgattaacaagttgcgacttgcgagaccttgttatattcattaatcaataaccgaacataattaacaacatatttaaactgcgttaac |
142 |
Q |
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| T |
2577970 |
gtgttcaacagatgattaacaagttgcgacttgcgagaccttgttatattcattaatc----accgaacataattgaccacatatttgaacggcgtaaac |
2578065 |
T |
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| Q |
143 |
cat-ttatttgttatcgtattttgatgacaaatttgtgt |
180 |
Q |
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| T |
2578066 |
catctaatttgttatcgtattttgaggacaaatttgtgt |
2578104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 29246438 - 29246513
Alignment:
| Q |
73 |
ttgcgagaccttgttatattcattaatcaataaccgaacataattaacaacatatttaaactgcgttaaccattta |
148 |
Q |
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| T |
29246438 |
ttgcgacaccttgttatattcattaaccatccacttaacttaattaatcacatatttaaactgcgtcaaccattta |
29246513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 4364330 - 4364268
Alignment:
| Q |
80 |
accttgttatattcattaatcaataaccgaacataattaacaacatatttaaactgcgttaac |
142 |
Q |
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| T |
4364330 |
accttgttattttcattaaccgatcactgaacataattaactacatatttgaattgcgttaac |
4364268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 31352828 - 31352775
Alignment:
| Q |
139 |
taaccatttatttgttatcgtattttgatgacaaatttgtgtgtcaaaatatca |
192 |
Q |
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| T |
31352828 |
taaccatctaattgttgtcgaattttgatgtcaaatttgtgtatcaaaatatca |
31352775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 37702108 - 37702140
Alignment:
| Q |
162 |
tttgatgacaaatttgtgtgtcaaaatatcatt |
194 |
Q |
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| T |
37702108 |
tttgatgacaaatttgtgtttcaaaatatcatt |
37702140 |
T |
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