View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_155 (Length: 243)
Name: NF20151_low_155
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_155 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 1904806 - 1905039
Alignment:
| Q |
7 |
tatataagctatagattgttatataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgc |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904806 |
tatataagctatagattgttttataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgc |
1904905 |
T |
|
| Q |
107 |
ttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagggttcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1904906 |
ttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagtgttcat |
1905005 |
T |
|
| Q |
207 |
ttgtgtatatttttaatgcattttgcagaataat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
1905006 |
ttgtgtatatttttaatgcattttgcagtataat |
1905039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 1909039 - 1909272
Alignment:
| Q |
7 |
tatataagctatagattgttatataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgc |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909039 |
tatataagctatagattgttttataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgc |
1909138 |
T |
|
| Q |
107 |
ttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagggttcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1909139 |
ttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagtgttcat |
1909238 |
T |
|
| Q |
207 |
ttgtgtatatttttaatgcattttgcagaataat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
1909239 |
ttgtgtatatttttaatgcattttgcagtataat |
1909272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University