View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_157 (Length: 242)
Name: NF20151_low_157
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_157 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 1219586 - 1219820
Alignment:
| Q |
13 |
ttaactcaggactct--gaggcggtagtaataaatcgatcctcacattcagctactgaagggccaacacttatagtgacccctgt--------------- |
95 |
Q |
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| T |
1219586 |
ttaactcaggactctctgaggcggtagtaattaatcgatcctcacattcagctactgaagggccaacacttatagtgacccctgtctcactttgaggaac |
1219685 |
T |
|
| Q |
96 |
---aatcatgttgccgctccttccaatatcacctccaattctatcgttgcaacatataattttgaaggcagtttcttgctgatgtgcttttgcttccaag |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
1219686 |
tctaatcatgttgccgctccttccaatatcacctccaattctatcgttgcaacatataattcttaaggcagtttcttgctgatgtgcttttgcttccaag |
1219785 |
T |
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| Q |
193 |
gatgaaactttattaactcctcccgacaatgaatg |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1219786 |
gatgaaactttattaactcctcccgacaatgaatg |
1219820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 2004986 - 2004776
Alignment:
| Q |
35 |
tagtaataaatcgatcctcacattcagctactgaagggccaacacttatagtgacccctgt------------------aatcatgttgccgctccttcc |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||| |||||||||| | |||| |
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| T |
2004986 |
tagtaattaatcgatcctcacattcagctactgaaggaccaacacttacagtggcccctgtctcactttgaagagctctaattatgttgccgccctttcc |
2004887 |
T |
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| Q |
117 |
aatatcacctccaattctatcgttgcaacatataattttgaaggcagtttcttgctgatgtgcttttgcttccaaggatgaaactttattaactcctccc |
216 |
Q |
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|||| |||||||||||||||| ||| |||| ||||||||||||| ||||||||||||| ||||||| ||||| |||||| ||| |||||||| || | |
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| T |
2004886 |
aataacacctccaattctatcattggaacaaataattttgaaggtgatttcttgctgatgcgcttttggttccagggatgagactctattaacttctgct |
2004787 |
T |
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| Q |
217 |
gacaatgaatg |
227 |
Q |
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| T |
2004786 |
gacaatgaatg |
2004776 |
T |
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