View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_16 (Length: 541)
Name: NF20151_low_16
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Complemental strand, 37661916 - 37661383
Alignment:
| Q |
14 |
atgcacaaattaagacattaaattcatatcgagtcgtcaatattttagggtatattcacgtaacattgttttattttttggagccattaaatttttctta |
113 |
Q |
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| T |
37661916 |
atgcacaaatttagacattaaattcatatcgactcgtcaatattttagggtatattcacgtaacattgttttattttttggagccattaaatttttctta |
37661817 |
T |
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| Q |
114 |
aaaatcctagactgataataa-gattgtcccc-tcannnnnnnnnnnnnnnn-ataaatcaacaatatctagtatacgtacaccgatacacaaactcata |
210 |
Q |
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| T |
37661816 |
aaaatcctagactgataataaagattgtccccctcattttattttatttttgtataaatcaacaatatctagtataagtacaccgatacacaaactcata |
37661717 |
T |
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| Q |
211 |
ctcactgtttcgaaatattaattatcatttcaatcgtatgataagaatcaaccggtgaataatatttt--gagaggagaatcaaccggtaaatagtaata |
308 |
Q |
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| T |
37661716 |
cttactatttcgaaatattaattatcatttcagtcgtatgataagaatcaaccggtaaataatattttttgagaggagaatcaaccggtaaatagtaata |
37661617 |
T |
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| Q |
309 |
agcctagttgcattgatcatttagccatccattttactcgaatttgatatataagcaatgtgcatgcatgtagagtgcgacggtgacatgattgattatc |
408 |
Q |
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| T |
37661616 |
agcctagttgcattgatcatttagccgtccgttttactcaaatttgatatataagcaatgtgcatgcatgtagagcgcgatggtgacatgattgattatc |
37661517 |
T |
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| Q |
409 |
ctataatcattaggttgataatgagttcttcaaccatatgacttaagttcgatatcgtgacacattagaagaag-aagnnnnnnntccttgagacccgtc |
507 |
Q |
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| T |
37661516 |
ctataatcattaggttgataatgagttcttcagccatatgacttaagttcgatattgtgacacattagaagaagaaaaaaaaaattccttgagacccgtc |
37661417 |
T |
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| Q |
508 |
cacctttgatatgaatttccgaaattgatcgaac |
541 |
Q |
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| T |
37661416 |
cacctttgatatgaatttccgaaattgatcgaac |
37661383 |
T |
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