View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_161 (Length: 239)
Name: NF20151_low_161
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_161 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 4322283 - 4322065
Alignment:
| Q |
20 |
acccaatcttctgaaattagaaatatatgtgagtactcatgtagttaagaatatgaggacaatcatgattgacatttaaggaccattatttttcccttat |
119 |
Q |
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| T |
4322283 |
acccaatcttctgaaattagaaatatatgtgagtactcatgtagttaagaatatgaggacaatcatgattgacatttaaggaccattatttttcccttat |
4322184 |
T |
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| Q |
120 |
aaaggtggtaatagtgatagactacatcaatttgagactttccatcatcaactttatctcattgttcatgtttgacagacaaaagaggtaaagcagaatg |
219 |
Q |
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| T |
4322183 |
aaaggtggtaatagtgatagactacatcaatttgagactttccatcatcaactttatctcattgttcatgtttgacagacaaaagaggtaaagcagaatg |
4322084 |
T |
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| Q |
220 |
tcacacacacagacacagtt |
239 |
Q |
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| T |
4322083 |
tca-acacacagacacagtt |
4322065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 4333183 - 4333138
Alignment:
| Q |
65 |
taagaatatgaggacaatcatgattgacatttaaggaccattattt |
110 |
Q |
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| T |
4333183 |
taagaatatgatgacaatcatgattgacatttgaggaccattattt |
4333138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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