View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_166 (Length: 237)

Name: NF20151_low_166
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_166
NF20151_low_166
[»] chr4 (13 HSPs)
chr4 (22-111)||(1051790-1051879)
chr4 (22-114)||(3168394-3168486)
chr4 (22-102)||(1646593-1646673)
chr4 (22-114)||(7633155-7633247)
chr4 (25-106)||(33033220-33033301)
chr4 (26-111)||(49081279-49081364)
chr4 (47-114)||(32056309-32056376)
chr4 (47-114)||(47742789-47742856)
chr4 (52-114)||(42274339-42274401)
chr4 (68-114)||(47089210-47089256)
chr4 (47-114)||(41454959-41455026)
chr4 (68-114)||(38609096-38609142)
chr4 (47-112)||(53374992-53375057)
[»] chr2 (13 HSPs)
chr2 (22-114)||(35470285-35470376)
chr2 (22-111)||(15658802-15658891)
chr2 (22-114)||(29108749-29108841)
chr2 (31-100)||(8186308-8186377)
chr2 (22-86)||(45326701-45326765)
chr2 (26-92)||(32143634-32143700)
chr2 (47-133)||(33635667-33635758)
chr2 (32-114)||(45716480-45716562)
chr2 (47-92)||(25749691-25749736)
chr2 (47-92)||(22348730-22348775)
chr2 (55-92)||(41855290-41855327)
chr2 (42-106)||(6970490-6970554)
chr2 (52-92)||(34393945-34393985)
[»] chr1 (7 HSPs)
chr1 (22-114)||(6395464-6395556)
chr1 (65-114)||(43638407-43638456)
chr1 (22-113)||(19998561-19998652)
chr1 (47-112)||(963955-964020)
chr1 (52-92)||(6918923-6918963)
chr1 (31-79)||(35285507-35285555)
chr1 (51-111)||(46598222-46598282)
[»] chr5 (10 HSPs)
chr5 (22-113)||(9922923-9923014)
chr5 (22-111)||(35457340-35457424)
chr5 (22-111)||(33054089-33054178)
chr5 (68-114)||(24181452-24181498)
chr5 (69-110)||(7313276-7313317)
chr5 (31-92)||(8590136-8590197)
chr5 (47-112)||(14148318-14148383)
chr5 (47-92)||(19336830-19336875)
chr5 (47-112)||(26440085-26440150)
chr5 (31-83)||(38083951-38084003)
[»] chr8 (15 HSPs)
chr8 (22-114)||(7662280-7662372)
chr8 (26-111)||(8457527-8457612)
chr8 (26-114)||(34127658-34127747)
chr8 (47-115)||(44362288-44362356)
chr8 (66-135)||(44801449-44801518)
chr8 (32-111)||(16938900-16938979)
chr8 (48-114)||(41646431-41646497)
chr8 (22-111)||(4613395-4613483)
chr8 (67-112)||(30157849-30157894)
chr8 (31-112)||(42563193-42563274)
chr8 (52-112)||(45114686-45114746)
chr8 (48-112)||(4366318-4366382)
chr8 (48-112)||(18087242-18087305)
chr8 (52-112)||(30157746-30157806)
chr8 (32-92)||(30362839-30362899)
[»] scaffold0603 (2 HSPs)
scaffold0603 (47-112)||(7084-7149)
scaffold0603 (57-112)||(6962-7017)
[»] chr3 (14 HSPs)
chr3 (32-113)||(4275481-4275562)
chr3 (25-98)||(37677368-37677441)
chr3 (22-114)||(14750334-14750426)
chr3 (22-114)||(55142316-55142408)
chr3 (22-73)||(30429402-30429453)
chr3 (50-106)||(40892801-40892857)
chr3 (47-114)||(38832955-38833022)
chr3 (65-112)||(49980315-49980362)
chr3 (52-86)||(32600677-32600711)
chr3 (52-90)||(44078502-44078540)
chr3 (47-112)||(27659755-27659820)
chr3 (26-79)||(39149167-39149220)
chr3 (47-112)||(51490209-51490274)
chr3 (52-88)||(43313552-43313588)
[»] chr7 (7 HSPs)
chr7 (47-114)||(8919383-8919450)
chr7 (31-113)||(30198319-30198401)
chr7 (26-109)||(22342310-22342393)
chr7 (46-112)||(30898093-30898159)
chr7 (45-114)||(6221091-6221160)
chr7 (47-113)||(45879113-45879179)
chr7 (47-112)||(40417684-40417749)
[»] chr6 (4 HSPs)
chr6 (22-111)||(8052211-8052299)
chr6 (26-112)||(29608451-29608537)
chr6 (32-92)||(9245974-9246034)
chr6 (47-111)||(31330522-31330586)
[»] scaffold0009 (1 HSPs)
scaffold0009 (47-131)||(140307-140388)
[»] scaffold0007 (1 HSPs)
scaffold0007 (65-114)||(185513-185562)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 1051879 - 1051790
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  1051879 tataatttgcattgaaaagagcaattttttaacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaa 1051790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 3168486 - 3168394
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||    
T  3168486 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttttaaagaaatatttcctttaataattccttaacca 3168394  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 1646593 - 1646673
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaata 102  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||  ||||||| |||||||||    
T  1646593 tataatttgcattgaaaagagcaactttttaacttttaaaacataaaatacacaattttcaaagaaatatttcctttaata 1646673  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 7633155 - 7633247
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||| ||| |||||||||  |||| |||||||||||||||| |||||||||||||||||||| |||  ||| ||||| |||||||||||||||    
T  7633155 tatattttgcattgaaaaatgcaattttttaacttttaaaatatagaatacacaattttcaaaaaatcatttccttttataattccttaacca 7633247  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 33033220 - 33033301
Alignment:
Q  25 aatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattc 106  Q
    ||||| ||||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||||||||||  |||| |||||||    
T  33033220 aatttgcattgaaaagagcaattttttagcttttaaaacttagaatacacaatttccaagaaaatattttcttttataattc 33033301  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 49081279 - 49081364
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||| ||||||||| |||||  ||||||||||||||| |||||||||||||||||||| |||||||| |||||  |||||| ||||    
T  49081279 atttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaattttcaaaaaaatatttccttttctaattctttaa 49081364  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 32056309 - 32056376
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||||||  || |||||||||||||||||| || ||| ||||| |||||| ||||||||    
T  32056309 tttttaacttttaaaaagtaaaatacacaattttcaagacaaaatttccttttataatttcttaacca 32056376  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 47742789 - 47742856
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||||||  || ||||||||| || ||||| |||||| ||||| |||||||||||||||    
T  47742789 tttttaacttttaaaatgtataatacacaaattccaagataatatttccttttataattccttaacca 47742856  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 42274339 - 42274401
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||| |||||| ||||||||||||| |||||||| |||||  ||||| ||||||||    
T  42274339 aacttttaaaaaatagaacacacaattttcaaaaaaatatttccttttctaattacttaacca 42274401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 47089256 - 47089210
Alignment:
Q  68 aatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  47089256 aatacacaattttcaagaaaacatttccttttataattccttaacca 47089210  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 41454959 - 41455026
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||| |||| ||| |||||||||||||||||| || ||| | ||| ||||||| |||||||    
T  41454959 tttttaactttcaaaaaataaaatacacaattttcaagataaaatttcttttcataattctttaacca 41455026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 38609142 - 38609096
Alignment:
Q  68 aatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||||||||| |||||| ||| ||||| |||||||||||||||    
T  38609142 aatacacaattttcgagaaaacatttccttttataattccttaacca 38609096  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 53374992 - 53375057
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||| |||||||||||  ||||||||||||||| ||||| |||||| ||||| ||| | |||||||    
T  53374992 ttttcaacttttaaaaagtagaatacacaatttccaagagaatatttccttttatattcccttaac 53375057  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 35470285 - 35470376
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  35470285 tataattggcattgaaaaaa-caactttttaacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaacca 35470376  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 15658891 - 15658802
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||    
T  15658891 tataatttgcattcaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattccttaa 15658802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 29108749 - 29108841
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||  |||||||| ||||| |||||||||||||||| ||  ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  29108749 tataatttgtattgaaaagagcaattttttaacttttaaaaaatgaaatacacaattttcaagaaaatatttccttttataattccttaacca 29108841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 8186377 - 8186308
Alignment:
Q  31 cattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaa 100  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  8186377 cattgaaaagagcaactttttaacttttaaaacataaaatacacaatttccaagaaaatatttcctttaa 8186308  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 45326701 - 45326765
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaa 86  Q
    |||||||| |||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  45326701 tataatttgcatttaaaagtgcaactttttaacttttaaaagatagaatacacaattttcaagaa 45326765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 32143700 - 32143634
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    |||| ||||||||||| |||  ||| ||||||||||| |||||||||||||||||||||||||||||    
T  32143700 atttacattgaaaataacaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatatt 32143634  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 33635758 - 33635667
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca-----ccggttaacatttccctaa 133  Q
    ||||||||||||||||  ||||||||||||||| ||||| ||||||  |||| |||||| | ||||||     |||||||||||||||||||    
T  33635758 tttttaacttttaaaaagtagaatacacaatttccaagacaatattttcttttataatttcctaaccagtgctccggttaacatttccctaa 33635667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 45716480 - 45716562
Alignment:
Q  32 attgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||||| ||  ||||||||||| ||||  |||||| || ||||| ||||| |||||| ||||| |||||||||||||||    
T  45716480 attgaaaataacacttttttaactttcaaaaagtagaatccataatttccaagacaatatttccttttataattccttaacca 45716562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 25749736 - 25749691
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||    
T  25749736 tttttaactttcaaaaaatagaatacacaatttccaagaaaatatt 25749691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 22348730 - 22348775
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    |||| ||||||||||| || |||| |||||||||||||||||||||    
T  22348730 ttttaaacttttaaaatattgaatgcacaattttcaagaaaatatt 22348775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 41855327 - 41855290
Alignment:
Q  55 ttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    |||||||||||  |||||||||||||||||||||||||    
T  41855327 ttttaaaacattaaatacacaattttcaagaaaatatt 41855290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 6970490 - 6970554
Alignment:
Q  42 gcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattc 106  Q
    |||| |||| ||||||||||||||| |||||||||||| |||| ||  ||| ||||| |||||||    
T  6970490 gcaatttttgaacttttaaaacataaaatacacaatttccaaggaatcatttccttttataattc 6970554  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 34393945 - 34393985
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    ||||||||||| ||||||||||||||||| || ||||||||    
T  34393945 aacttttaaaaaatagaatacacaatttttaaaaaaatatt 34393985  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 6395556 - 6395464
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  6395556 tataatttgcattgaaaagaacaactttttaacttttaaaacataaaatacacaattttcaaaaaaatattttctttaataattccttaacca 6395464  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 43638407 - 43638456
Alignment:
Q  65 tagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  43638407 tagaatacacaattttcaagacaatatttccttttataattccttaacca 43638456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 19998561 - 19998652
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacc 113  Q
    |||||| | |||||||||   ||| |||||||||||||||| ||||||||||||||||||||  || ||||  |||| || |||||||||||    
T  19998561 tataatatgcattgaaaagtacaattttttaacttttaaaatatagaatacacaattttcaaagaattattttcttttatgattccttaacc 19998652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 964020 - 963955
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||||| ||| | |||||||||||||    
T  964020 tttttaactttgaaaaagtagaatacacaatttccaagacaatatttcctattataattccttaac 963955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 6918923 - 6918963
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    |||||||| ||||| |||||||||| |||||||||||||||    
T  6918923 aacttttacaacattgaatacacaagtttcaagaaaatatt 6918963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 35285555 - 35285507
Alignment:
Q  31 cattgaaaatagcaactttttaacttttaaaacatagaatacacaattt 79  Q
    ||||||||||| ||  |||||||||||||||| ||| ||||||||||||    
T  35285555 cattgaaaataacacttttttaacttttaaaaaataaaatacacaattt 35285507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 46598282 - 46598222
Alignment:
Q  51 taacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||||| ||||| |||||||||| || |||||||||||||||  ||||  |||||||||||    
T  46598282 taacttgtaaaaaatagaatacataactttcaagaaaatattttctttcttaattccttaa 46598222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 9922923 - 9923014
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacc 113  Q
    ||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||||||  |||||||  |||||||||||||||||||    
T  9922923 tataatttgaattgaaaagagcaactttttaacttttaaaacatataatacacaattttcaaagaaatattttctttaataattccttaacc 9923014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 35457424 - 35457340
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||||||| ||||||||| | |||||||||||||||| |||||||||||     ||||||||||||||||| ||||||||||||||||||    
T  35457424 tataatttgcattgaaaagaacaactttttaacttttcaaacatagaat-----attttcaagaaaatatttcctttaataattccttaa 35457340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 33054089 - 33054178
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    ||||||||  |||||||| |  |||||||||| |||| ||| ||||||||||||||||| ||||||||||| | |||||||||| |||||    
T  33054089 tataatttaaattgaaaagaataactttttaatttttcaaatatagaatacacaattttaaagaaaatatttcttttaataatttcttaa 33054178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 24181498 - 24181452
Alignment:
Q  68 aatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||||||||||| | |||||| ||||| |||||||||||||||    
T  24181498 aatacacaattttcaatacaatatttccttttataattccttaacca 24181452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 7313276 - 7313317
Alignment:
Q  69 atacacaattttcaagaaaatattacctttaataattcctta 110  Q
    |||||||||||||||||||||||| | ||| |||||||||||    
T  7313276 atacacaattttcaagaaaatatttctttttataattcctta 7313317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 8590197 - 8590136
Alignment:
Q  31 cattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    ||||||||||| ||  ||||||||||||||||  || |||||||||||| ||| ||||||||    
T  8590197 cattgaaaataacacttttttaacttttaaaaggtaaaatacacaatttccaaaaaaatatt 8590136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 14148318 - 14148383
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||||  | ||| |||||||||||||    
T  14148318 tttttaactttcaaaaagtagaatacacaatttccaagataatatgtctttttataattccttaac 14148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 19336830 - 19336875
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    ||||||||||| ||||  |||||||||||||||| |||||||||||    
T  19336830 tttttaactttcaaaaagtagaatacacaatttttaagaaaatatt 19336875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 26440150 - 26440085
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||||||||  |||||||||||||||  || || ||||| | ||| |||||||||||||    
T  26440150 tttttaacttttaaaaagtagaatacacaatttctaaaaagatatttcattttataattccttaac 26440085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 38084003 - 38083951
Alignment:
Q  31 cattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaa 83  Q
    ||||||||| |||||  ||||||||||||||| ||| ||||||| ||||||||    
T  38084003 cattgaaaagagcaatgttttaacttttaaaatatacaatacaccattttcaa 38083951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 7662280 - 7662372
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||| ||||||||| | ||| ||| |||||||||||| |||||||||||||||| ||| |||||||| |||||||||||| ||||||||    
T  7662280 tataatttgcattgaaaaaaacaattttctaacttttaaaatatagaatacacaatttccaaaaaaatatttcctttaataatttcttaacca 7662372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 8457527 - 8457612
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||| ||||||||| |||||| ||| ||||||||||| |||||||||||||||| |||||||||||| |||||  |||||||||||    
T  8457527 atttacattgaaaagagcaacatttcaacttttaaaaaatagaatacacaatttccaagaaaatatttccttttctaattccttaa 8457612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 34127747 - 34127658
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaa-atattacctttaataattccttaacca 114  Q
    |||| ||||||||| |||||  ||||||||||||||| |||||||||||||||| ||||||| ||||| |||||  ||||||||||||||    
T  34127747 atttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaatttccaagaaatatatttccttttctaattccttaacca 34127658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 44362356 - 44362288
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaaccac 115  Q
    ||||||||||| |||| |||||||||||||||||||| | |||||| | ||| ||||||||||||||||    
T  44362356 tttttaactttcaaaaaatagaatacacaattttcaatacaatatttctttttataattccttaaccac 44362288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 44801518 - 44801449
Alignment:
Q  66 agaatacacaattttcaagaaaatattacctttaataattccttaaccaccggttaacatttccctaaaa 135  Q
    ||||| ||||||||  |||| || ||| ||||| |||||||||||||||| |||||||||||||||||||    
T  44801518 agaatgcacaatttctaagacaaaatttccttttataattccttaaccactggttaacatttccctaaaa 44801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 16938979 - 16938900
Alignment:
Q  32 attgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||||||| ||||  ||||||||||| ||||  ||||||||||||||||||||| | |||| ||| | ||||||||||||    
T  16938979 attgaaaacagcacttttttaactttaaaaaagtagaatacacaattttcaagacactatttcctcttataattccttaa 16938900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 41646497 - 41646431
Alignment:
Q  48 ttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||||| |||||||||||||||| ||||||| | || ||||   ||||||||||||||    
T  41646497 ttttaacttttaaaaaatagaatacacaatttgcaagaaattttttccttatttaattccttaacca 41646431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 4613483 - 4613395
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    |||||||| |||| |||| | ||| |||||||||||||||||  |||||||| || |||||| ||||||||  |||| ||||||||||||    
T  4613483 tataatttgcattaaaaagatcaattttttaacttttaaaactcagaatacataa-tttcaaaaaaatattttcttttataattccttaa 4613395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 30157849 - 30157894
Alignment:
Q  67 gaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||    
T  30157849 gaatatacaattttcaagaaaatatttcctttaataattcattaac 30157894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 42563274 - 42563193
Alignment:
Q  31 cattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||| | ||| || |||||||| |||| ||||||| || ||||||||| | |||||| ||||| |||||||||||||    
T  42563274 cattgaaaagaacaatttattaactttcaaaaaatagaatgcagaattttcaatacaatatttccttttataattccttaac 42563193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 45114746 - 45114686
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||||||||| |||||||||||||| |||| ||| | ||| ||||||| |||||    
T  45114746 aacttttaaaacatagactacacaattttcaaaaaaaaatttcattttataattctttaac 45114686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 4366318 - 4366382
Alignment:
Q  48 ttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||||||||||||||  ||||||||| ||||||||| | |||||| | ||| || ||||||||||    
T  4366318 ttttaacttttaaaaagtagaatacataattttcaaaataatatttcattttatgattccttaac 4366382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 18087242 - 18087305
Alignment:
Q  48 ttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||| ||||| ||||  ||||||||||||||||||||| |||||| ||||| || ||||||||||    
T  18087242 ttttgactttcaaaaagtagaatacacaattttcaagagaatatttccttttat-attccttaac 18087305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 30157746 - 30157806
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||||| ||||  ||||||||||||||| |||||||||||| ||||| |  ||||||||||    
T  30157746 aactttcaaaaagtagaatacacaatttccaagaaaatatttccttttacgattccttaac 30157806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 30362899 - 30362839
Alignment:
Q  32 attgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    |||||||| |||||  ||| ||||||| ||| ||| |||||||||||||||| ||||||||    
T  30362899 attgaaaagagcaatatttcaactttttaaaaataaaatacacaattttcaaaaaaatatt 30362839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 7149 - 7084
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  7149 tttttaacttttaaaatatagaatacacaattttcaagaaattatttccttttacatttccttaac 7084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 7017 - 6962
Alignment:
Q  57 ttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||||||||||||||||||||||||||||||  ||| ||||| | |||||||||||    
T  7017 ttaaaacatagaatacacaattttcaagaaatcatttccttttacaattccttaac 6962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 4275562 - 4275481
Alignment:
Q  32 attgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacc 113  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||   || ||| | ||||||||||||||    
T  4275562 attgaaaagtgcaattttttaacttttaaaacatagaatacacaattttcaaggaatcgtttcctcttataattccttaacc 4275481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 37677441 - 37677368
Alignment:
Q  25 aatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattaccttt 98  Q
    ||||| |||||| || |||||  ||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  37677441 aatttacattgacaagagcaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttt 37677368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 14750426 - 14750334
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||  ||||||||  |||| |||||||||||||||| |||||||||||||||| |||| ||  ||| ||| | |||||||||||||||    
T  14750426 tataatttgtattgaaaagtgcaaatttttaacttttaaaatatagaatacacaatttccaaggaatcatttcctcttataattccttaacca 14750334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 55142316 - 55142408
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||| || ||||||||| | | ||||||||| ||| ||||||||||||||||||||| ||| ||||||||  |||| ||||||| |||||||    
T  55142316 tataacttgcattgaaaagatcgactttttaaatttcaaaacatagaatacacaatttccaaaaaaatattttcttttataattctttaacca 55142408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 30429402 - 30429453
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaataca 73  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||||||    
T  30429402 tataatttgcattgaaaaaagcaatattttaacttttaaaacatagaataca 30429453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 40892857 - 40892801
Alignment:
Q  50 ttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattc 106  Q
    |||||||| ||||  ||||||||||||||| |||||||||||| ||||| |||||||    
T  40892857 ttaactttcaaaaagtagaatacacaatttccaagaaaatatttccttttataattc 40892801  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 38833022 - 38832955
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||| ||||  ||||||||| ||||||||| | |||||| ||||| |||||| ||||||||    
T  38833022 tttttaactttcaaaaagtagaatacataattttcaatacaatatttccttttataatttcttaacca 38832955  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 49980362 - 49980315
Alignment:
Q  65 tagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||||||| ||||| |||||| ||||| |||||||||||||    
T  49980362 tagaatacacaatttccaagataatatttcctttcataattccttaac 49980315  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 32600711 - 32600677
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaa 86  Q
    ||||||||||| |||||||||||||||||||||||    
T  32600711 aacttttaaaatatagaatacacaattttcaagaa 32600677  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 44078502 - 44078540
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaata 90  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  44078502 aacttttacaacatagaatacacaaatttcaagaaaata 44078540  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 27659755 - 27659820
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||| |||||| |||| |||||||||||||||||||| ||| |||| | ||| ||||||| |||||    
T  27659755 ttttcaactttcaaaaaatagaatacacaattttcaaaaaattatttcattttataattcattaac 27659820  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 39149220 - 39149167
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattt 79  Q
    |||| ||||||||||| |||  ||| ||||||||||| ||||||||||||||||    
T  39149220 atttgcattgaaaataacaatatttcaacttttaaaaaatagaatacacaattt 39149167  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 51490209 - 51490274
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||| ||||  || |||||| ||||||||||| ||||||  |||| |||||||||||||    
T  51490209 tttttaactttcaaaaggtataatacaaaattttcaagagaatattttcttttataattccttaac 51490274  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 43313552 - 43313588
Alignment:
Q  52 aacttttaaaacatagaatacacaattttcaagaaaa 88  Q
    |||||||||||||  ||||||||||||||||||||||    
T  43313552 aacttttaaaacaacgaatacacaattttcaagaaaa 43313588  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 8919450 - 8919383
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    |||||||||||||||| |||||||| ||||||||||| |||  ||| ||||| |||||||||||||||    
T  8919450 tttttaacttttaaaatatagaatatacaattttcaaaaaatcatttccttttataattccttaacca 8919383  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 30198401 - 30198319
Alignment:
Q  31 cattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacc 113  Q
    ||||||||||  |||  ||| ||||||||||| ||||||||||||||||  ||||||||||| |||||  |||||||||||||    
T  30198401 cattgaaaatgacaatatttcaacttttaaaaaatagaatacacaatttctaagaaaatatttccttttctaattccttaacc 30198319  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 22342393 - 22342310
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattcctt 109  Q
    |||| ||||||||||| ||   ||| |||||||||||||||||||| |||||||||| |||||||||  ||||  |||||||||    
T  22342393 atttacattgaaaataacactatttcaacttttaaaacatagaatagacaattttcatgaaaatattttcttttctaattcctt 22342310  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 30898093 - 30898159
Alignment:
Q  46 ctttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||||||||||| ||||  ||||||  ||| |||||||||||||||| ||||| |||||||||||||    
T  30898093 ctttttaactttcaaaaagtagaatgtacagttttcaagaaaatatttccttttataattccttaac 30898159  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 6221091 - 6221160
Alignment:
Q  45 actttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||| ||||  ||||||| ||||||| ||||| |||||  ||||| |||||||||||||||    
T  6221091 actttttaactttcaaaaagtagaatatacaatttccaagacaatatctccttttataattccttaacca 6221160  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 45879179 - 45879113
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaacc 113  Q
    |||||| |||| ||||  ||||||||||||||| ||||| || ||| ||||| ||||||||||||||    
T  45879179 tttttacctttcaaaaagtagaatacacaatttccaagacaaaatttccttttataattccttaacc 45879113  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 40417684 - 40417749
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    ||||||||||| |||| |||||| ||||||||| ||| | ||||||  |||| |||||||||||||    
T  40417684 tttttaactttcaaaaaatagaaaacacaatttccaaaacaatattttcttttataattccttaac 40417749  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 8052299 - 8052211
Alignment:
Q  22 tataatttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    ||||||||  ||||||||  ||||||||| |||||||||||||||||||||||||||| |||| ||  ||| ||||| |||||| |||||    
T  8052299 tataatttttattgaaaagtgcaactttt-aacttttaaaacatagaatacacaatttccaaggaataatttccttttataatttcttaa 8052211  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 29608537 - 29608451
Alignment:
Q  26 atttccattgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaac 112  Q
    |||| ||||||||| | |||  ||||||||||||||| |||||||||| ||||| ||| || ||||| |||||  ||||| ||||||    
T  29608537 atttacattgaaaagaacaatattttaacttttaaaaaatagaatacataatttccaaaaatatatttccttttttaatttcttaac 29608451  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 9245974 - 9246034
Alignment:
Q  32 attgaaaatagcaactttttaacttttaaaacatagaatacacaattttcaagaaaatatt 92  Q
    |||||||||| ||  ||||||||||| ||||  |||||| ||||||||| |||||||||||    
T  9245974 attgaaaataacacttttttaactttcaaaaagtagaatgcacaatttttaagaaaatatt 9246034  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 31330586 - 31330522
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaa 111  Q
    ||||||||||| ||||  ||||||||||||||||||||| || ||| ||| | ||||||| ||||    
T  31330586 tttttaactttcaaaaagtagaatacacaattttcaagacaaaatttcctcttataattctttaa 31330522  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 140307 - 140388
Alignment:
Q  47 tttttaacttttaaaacatagaatacacaattttcaagaaaatattacctttaataattccttaaccaccggttaacatttccct 131  Q
    ||||||||||| |||| |||||||||| ||||||||||| || ||| | ||| |||||||||||   || |||||||||||||||    
T  140307 tttttaactttcaaaaaatagaatacataattttcaagataaaatttcattttataattcctta---actggttaacatttccct 140388  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 185513 - 185562
Alignment:
Q  65 tagaatacacaattttcaagaaaatattacctttaataattccttaacca 114  Q
    ||||||||||||||||||| | ||||||  |||| |||||||||||||||    
T  185513 tagaatacacaattttcaatacaatattttcttttataattccttaacca 185562  T

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