View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_17 (Length: 533)

Name: NF20151_low_17
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_17
NF20151_low_17
[»] chr8 (11 HSPs)
chr8 (9-516)||(5665945-5666450)
chr8 (308-516)||(5687315-5687520)
chr8 (308-516)||(5719431-5719636)
chr8 (103-317)||(5687047-5687257)
chr8 (103-317)||(5719163-5719374)
chr8 (9-106)||(5719035-5719132)
chr8 (9-106)||(5686919-5687016)
chr8 (12-104)||(5652166-5652258)
chr8 (194-282)||(5652558-5652646)
chr8 (12-104)||(5601497-5601589)
chr8 (12-104)||(5639031-5639123)
[»] chr4 (5 HSPs)
chr4 (380-516)||(105918-106054)
chr4 (195-282)||(106145-106232)
chr4 (380-466)||(166505-166591)
chr4 (10-104)||(166763-166857)
chr4 (204-264)||(166697-166757)
[»] chr7 (3 HSPs)
chr7 (380-466)||(13054445-13054531)
chr7 (12-87)||(13055048-13055123)
chr7 (193-282)||(13054767-13054859)
[»] scaffold0013 (2 HSPs)
scaffold0013 (380-516)||(90717-90853)
scaffold0013 (194-282)||(90397-90488)
[»] chr3 (1 HSPs)
chr3 (194-282)||(12135539-12135627)


Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 5665945 - 5666450
Alignment:
Q  9 gagatgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgtatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5665945 gagatgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgtatt 5666044  T
Q  109 tataagtagtttcttttacacaacattcatttgtagttagatagtaacaaagcatgaattttaatttacagtaaacggcgaaggtacctggccggcatga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5666045 tataagtagtttcttttacacaacattcatttgtagttagatagtaaaaaagcatgaattttaatttacagtaaacggcgaaggtacctggccggcatga 5666144  T
Q  209 atcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcatatattattttcatcattgtcatatca 308  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  5666145 atcaaagccattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtgcatatatctgcatatattattttcatca--gtcatatca 5666242  T
Q  309 ttttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctct 408  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5666243 ttttaaaaatataccatgcaattaatttagttcattattagtaaataataataattaattatttaactacaaaccttttttgagcttgaaagatggctct 5666342  T
Q  409 ctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattctcataagtcttgccggcggctgttagacc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  5666343 ctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagacc 5666442  T
Q  509 gccaagag 516  Q
    ||||||||    
T  5666443 gccaagag 5666450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 308 - 516
Target Start/End: Original strand, 5687315 - 5687520
Alignment:
Q  308 attttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctc 407  Q
    ||||| || ||||||||||||||||||||||||||||||||| |||||   |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  5687315 atttttaatatataccatgcaattaatttagttcattattagtaaata---ataattaattatttaaagacaaaccttttttgagcatgaaagatggctc 5687411  T
Q  408 tctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattctcataagtcttgccggcggctgttagac 507  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  5687412 tctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttgccggcggctgttagac 5687511  T
Q  508 cgccaagag 516  Q
    |||||||||    
T  5687512 cgccaagag 5687520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 308 - 516
Target Start/End: Original strand, 5719431 - 5719636
Alignment:
Q  308 attttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctc 407  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||   |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  5719431 attttaaaaatataccatgcaattgatttagttcattattagtaaata---ataattaaatatttaacgacaaaccttttttgagcatgaaagatggctc 5719527  T
Q  408 tctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattctcataagtcttgccggcggctgttagac 507  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||    
T  5719528 tctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaacacaattctcataagtcttgcccgcgactgctagac 5719627  T
Q  508 cgccaagag 516  Q
    | |||||||    
T  5719628 caccaagag 5719636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 5687047 - 5687257
Alignment:
Q  103 tgtatttataagtagtttcttttacacaacattcatttgtagttagatagtaacaaagcatgaattttaatttacagtaaacggcgaaggtacctggccg 202  Q
    |||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |  || |||||||||||||||    
T  5687047 tgtattcattagtagttt-ttttacacaacattcatttgtagttatatagtaacaaagcatgaattttaatttacaatgacaggtgaaggtacctggccg 5687145  T
Q  203 gcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcatatattattttcatcattgtc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| | | ||||||    
T  5687146 gcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat-tat--tttccttaattgtc 5687242  T
Q  303 atatcattttaaaaa 317  Q
    |||||||||||||||    
T  5687243 atatcattttaaaaa 5687257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 5719163 - 5719374
Alignment:
Q  103 tgtatttataagtagtttcttttacacaacattcatttgtagttagatagtaacaaagcatgaattttaatttacagtaaacggcgaaggtacctggccg 202  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||  || ||||||||||||||     
T  5719163 tgtattcattagtagttttttttacacaacattcatttgtagttagatagtgacaaagcatgaattttaatttaaaataacaggtgaaggtacctggcca 5719262  T
Q  203 gcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcatatattattttca-tcattgt 301  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||    
T  5719263 gcatgaatcaaagctattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtacatatatctgc----attattttcattcattgt 5719358  T
Q  302 catatcattttaaaaa 317  Q
    ||| |||||| |||||    
T  5719359 catgtcatttaaaaaa 5719374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 5719035 - 5719132
Alignment:
Q  9 gagatgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgta 106  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5719035 gagatgaacctgttggggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgta 5719132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 5686919 - 5687016
Alignment:
Q  9 gagatgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgta 106  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5686919 gagataaacctgttggggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagggtctctctccgcctgta 5687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 5652166 - 5652258
Alignment:
Q  12 atgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg 104  Q
    |||||||||||||||||| |||||||| | || ||||  |||||||||||||||| ||||||||||||||| ||| | |||| ||||||||||    
T  5652166 atgaacctgttggggccagtcaccctcttctaattgggaattgatgattaattttgcagcacgatgaagagtagttgggtctatctccgcctg 5652258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 5652558 - 5652646
Alignment:
Q  194 acctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat 282  Q
    |||||||| |||||||| ||| |||| ||||||||||| || || |||||||||||| | | |||||| |||||||||||| |||||||    
T  5652558 acctggccagcatgaattaaacccataagagcccatgcagtttgaacaatatttgatcgacctccttcgagaggtacatatgtctgcat 5652646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 5601589 - 5601497
Alignment:
Q  12 atgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg 104  Q
    ||||||||||||||||||  | || || | ||||||   |||||| ||||| ||| ||||||||||||||||||||| |||| ||| ||||||    
T  5601589 atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg 5601497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 5639031 - 5639123
Alignment:
Q  12 atgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg 104  Q
    ||||||||||||||||||  | || || | ||||||   |||||| ||||| ||| ||||||||||||||||||||| |||| ||| ||||||    
T  5639031 atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg 5639123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 380 - 516
Target Start/End: Complemental strand, 106054 - 105918
Alignment:
Q  380 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattc 479  Q
    ||||||||||| ||||||||||| |||||| ||||| |||||||||||||| ||| |||| || ||||||||||||||||||||||| |||   |||||     
T  106054 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgttgtgagaagaaatttaacagctttgcgaatagcagcgcaattg 105955  T
Q  480 tcataagtcttgccggcggctgttagaccgccaagag 516  Q
      |||||||||||| || |||| || ||| |||||||    
T  105954 gtataagtcttgccagcagctgctaaaccaccaagag 105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 106232 - 106145
Alignment:
Q  195 cctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat 282  Q
    |||||||||||||||| ||| |||| ||||||||||| || ||||||| ||| ||| |||||||||| ||||||||||||||||||||    
T  106232 cctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatcggcttccttcgagaggtacatatatctgcat 106145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 166591 - 166505
Alignment:
Q  380 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaat 466  Q
    ||||||||||| || |||||||| |||||| ||||| |||||||| | ||  |||||| | || |||||||||||||| ||||||||    
T  166591 aaccttttttgggcatgaaagatagctctccccccacccaccatcttttccctgtattctcagaagaaatttaacagccttgcgaat 166505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 166857 - 166763
Alignment:
Q  10 agatgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg 104  Q
    ||||||||||||||||||||||  || || |  |  |||  ||||||||  |||||| ||||||||||||||||||||| ||||||||| |||||    
T  166857 agatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg 166763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 166757 - 166697
Alignment:
Q  204 catgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaag 264  Q
    ||||||| |||||||| ||||||||||| || ||||||| ||||||  | |||||||||||    
T  166757 catgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttcaag 166697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 13054531 - 13054445
Alignment:
Q  380 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaat 466  Q
    ||||||||||| || |||||||| |||||||||||| |||||||||||||||||| |||  || ||||||| ||||||||| |||||    
T  13054531 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgttgagagaagaaattgaacagctttacgaat 13054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 13055123 - 13055048
Alignment:
Q  12 atgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagta 87  Q
    ||||||||||||||||||||||||||| || |  |||  ||||||||  |||||| ||| ||||||||||||||||    
T  13055123 atgaacctgttggggccaatcaccctctttcaactgggaattgatgagaaattttgcagaacgatgaagaggagta 13055048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 13054859 - 13054767
Alignment:
Q  193 tacctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattg---gcttccttcaagaggtacatatatctgcat 282  Q
    ||||||||| |||| ||| |||  ||| ||| ||||||| || ||||||| |||||||||   ||||||||||||||||| |||| |||||||    
T  13054859 tacctggccagcataaattaaactcatgagaccccatgcagtttgtacaacatttgattgctggcttccttcaagaggtatatatttctgcat 13054767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 516
Target Start/End: Original strand, 90717 - 90853
Alignment:
Q  380 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattc 479  Q
    ||||||||| | || |||||||| |||||||||||| ||||| || | |||||||||||| || ||||||||||||||||| ||||| |||  ||||||     
T  90717 aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacgaatagcatcacaatta 90816  T
Q  480 tcataagtcttgccggcggctgttagaccgccaagag 516  Q
      |||| ||||||| || |||| || ||| |||||||    
T  90817 gtataattcttgccagcagctgctaaaccaccaagag 90853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 90397 - 90488
Alignment:
Q  194 acctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttga---ttggcttccttcaagaggtacatatatctgcat 282  Q
    |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||    ||||||||||||||||||||||||| ||||||    
T  90397 acctggccagcatgaattaaacccataagagcccatgcagtttgtacaacatttgactcctggcttccttcaagaggtacatatacctgcat 90488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 12135539 - 12135627
Alignment:
Q  194 acctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat 282  Q
    |||||||| |||||||| ||| |||  ||||||||||| |||||||||| |||||||   ||||||||||||||||  |||||||||||    
T  12135539 acctggccagcatgaattaaacccagaagagcccatgcagtctgtacaagatttgatctacttccttcaagaggtatgtatatctgcat 12135627  T

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