View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_170 (Length: 235)

Name: NF20151_low_170
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_170
NF20151_low_170
[»] chr2 (9 HSPs)
chr2 (15-211)||(13793809-13794005)
chr2 (184-231)||(9745341-9745388)
chr2 (181-228)||(41324886-41324933)
chr2 (187-228)||(41325021-41325062)
chr2 (183-231)||(24145218-24145266)
chr2 (189-228)||(24145157-24145196)
chr2 (186-219)||(13793669-13793702)
chr2 (183-230)||(14251212-14251259)
chr2 (186-231)||(22536996-22537041)
[»] chr1 (4 HSPs)
chr1 (179-230)||(17322073-17322124)
chr1 (186-231)||(30018694-30018740)
chr1 (186-228)||(31142429-31142471)
chr1 (184-228)||(7003082-7003126)
[»] chr8 (3 HSPs)
chr8 (181-232)||(44015921-44015972)
chr8 (192-231)||(9040962-9041001)
chr8 (185-230)||(41667870-41667915)
[»] chr7 (3 HSPs)
chr7 (192-230)||(37701250-37701288)
chr7 (192-231)||(48073132-48073171)
chr7 (184-228)||(36618093-36618137)
[»] chr4 (9 HSPs)
chr4 (184-230)||(12329034-12329080)
chr4 (183-229)||(54335419-54335465)
chr4 (197-230)||(34290742-34290775)
chr4 (184-231)||(3703571-3703618)
chr4 (196-231)||(53860901-53860936)
chr4 (192-230)||(2605479-2605517)
chr4 (186-226)||(2605367-2605407)
chr4 (192-228)||(21538845-21538881)
chr4 (183-231)||(53860772-53860820)
[»] chr5 (4 HSPs)
chr5 (186-231)||(8367019-8367064)
chr5 (186-231)||(10818882-10818927)
chr5 (183-231)||(4192007-4192055)
chr5 (190-230)||(4639536-4639576)
[»] chr3 (2 HSPs)
chr3 (186-230)||(26851186-26851229)
chr3 (190-230)||(26851336-26851376)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 13794005 - 13793809
Alignment:
Q  15 aaaatatcaagaagtagtgttgaaactggtgatgattgtgtctccatgatacaaggagttagtaatgttaccatcaagagaatcaggtgtggtccaggac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13794005 aaaatatcaagaagtagtgttgaaactggtgatgattgtgtctccatgatacaaggagttagtaatgttaccatcaagagaatcaggtgtggtccaggac 13793906  T
Q  115 atggtatcaggtaacctaaattgctgtttacattttttgccataaaatttagggtgataatctgatggaaattgctgttttgacatccattgtttct 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13793905 atggtatcaggtaacctaaattgctgtttacattttttggcataaattttagggtgataatctgatggaaattgctgttttgacatccattgtttct 13793809  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 9745341 - 9745388
Alignment:
Q  184 aattgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9745341 aattgctgttttgacatccattgtttcttagaaacatgtggaaatgac 9745388  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 41324886 - 41324933
Alignment:
Q  181 ggaaattgctgttttgacatccattgtttcttagaaacacatggaaat 228  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  41324886 ggaaactgctgttttgacatccattgtttcttagaaacacattgaaat 41324933  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 41325062 - 41325021
Alignment:
Q  187 tgctgttttgacatccattgtttcttagaaacacatggaaat 228  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  41325062 tgctattttgacatccattgtttcttagaaacacatggaaat 41325021  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 24145266 - 24145218
Alignment:
Q  183 aaattgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  24145266 aaattgttgttttaacatccattatttcttagaaacacatggaaatgac 24145218  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 24145157 - 24145196
Alignment:
Q  189 ctgttttgacatccattgtttcttagaaacacatggaaat 228  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  24145157 ctgttttgacatccattgtttcttagaaacatatggaaat 24145196  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 13793669 - 13793702
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaaca 219  Q
    ||||||||||||||||||||||||||||||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaaca 13793702  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 14251259 - 14251212
Alignment:
Q  183 aaattgctgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    |||||| |||||||||||  ||||||||||||||| ||||||||||||    
T  14251259 aaattgttgttttgacatttattgtttcttagaaatacatggaaatga 14251212  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 22537041 - 22536996
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||| ||||||||||||| ||||| |||||| |||||||||||||    
T  22537041 ttgcttttttgacatccatcgtttcctagaaatacatggaaatgac 22536996  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 17322073 - 17322124
Alignment:
Q  179 atggaaattgctgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  17322073 atggaaattgctgttttgacatatattgtttcttagaaacaaatggaaatga 17322124  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 30018740 - 30018694
Alignment:
Q  186 ttgctgttttgacatccattgtttcttag-aaacacatggaaatgac 231  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgac 30018694  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 31142429 - 31142471
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaacacatggaaat 228  Q
    ||||| |||||||||||||| |||| |||||||||||||||||    
T  31142429 ttgcttttttgacatccattatttcatagaaacacatggaaat 31142471  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 7003082 - 7003126
Alignment:
Q  184 aattgctgttttgacatccattgtttcttagaaacacatggaaat 228  Q
    ||||| ||||||||| | |||||||||||||||||||||| ||||    
T  7003082 aattgttgttttgactttcattgtttcttagaaacacatgaaaat 7003126  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 44015921 - 44015972
Alignment:
Q  181 ggaaattgctgttttgacatccattgtttcttagaaacacatggaaatgaca 232  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||||||    
T  44015921 ggaaattgctgttttgatgtccattgtttcttaaaaacacatgaaaatgaca 44015972  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 9041001 - 9040962
Alignment:
Q  192 ttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  9041001 ttttgacattcattgtttcctagaaacacatggaaatgac 9040962  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 41667870 - 41667915
Alignment:
Q  185 attgctgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    |||| |||||| ||||| ||||||||||||||||||||| ||||||    
T  41667870 attgttgttttaacatctattgtttcttagaaacacatgaaaatga 41667915  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 37701250 - 37701288
Alignment:
Q  192 ttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37701250 ttttgacatccattgtttcttagaaacatatggaaatga 37701288  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 48073171 - 48073132
Alignment:
Q  192 ttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  48073171 ttttgacatccattgtttcctaaaaacacatggaaatgac 48073132  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 36618093 - 36618137
Alignment:
Q  184 aattgctgttttgacatccattgtttcttagaaacacatggaaat 228  Q
    ||||| ||||||||||| |||||||||||| |||||| |||||||    
T  36618093 aattgttgttttgacattcattgtttcttaaaaacacttggaaat 36618137  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 12329080 - 12329034
Alignment:
Q  184 aattgctgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  12329080 aattgttgttttgacatccattgttttttagaaacacatgaaaatga 12329034  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 54335419 - 54335465
Alignment:
Q  183 aaattgctgttttgacatccattgtttcttagaaacacatggaaatg 229  Q
    |||||| |||| | |||||||||||||||||||||||||||||||||    
T  54335419 aaattgttgttctcacatccattgtttcttagaaacacatggaaatg 54335465  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 34290742 - 34290775
Alignment:
Q  197 acatccattgtttcttagaaacacatggaaatga 230  Q
    ||||||||||||||||||||||||||||||||||    
T  34290742 acatccattgtttcttagaaacacatggaaatga 34290775  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 3703571 - 3703618
Alignment:
Q  184 aattgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||| |||||| ||||||||||||| ||||||||||||| |||||||    
T  3703571 aattgttgttttaacatccattgttttttagaaacacatgaaaatgac 3703618  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 53860936 - 53860901
Alignment:
Q  196 gacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgac 53860901  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 2605517 - 2605479
Alignment:
Q  192 ttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  2605517 ttttgacatccattatttcctagaaacacatggaaatga 2605479  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 2605367 - 2605407
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaacacatggaa 226  Q
    ||||| ||||||||| ||||||||| |||||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatggaa 2605407  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 21538845 - 21538881
Alignment:
Q  192 ttttgacatccattgtttcttagaaacacatggaaat 228  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21538845 ttttgacatccattgttttctagaaacacatggaaat 21538881  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 53860772 - 53860820
Alignment:
Q  183 aaattgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    |||||||| || | ||||||| |||||| ||||||||||||||||||||    
T  53860772 aaattgcttttctcacatccaatgtttcctagaaacacatggaaatgac 53860820  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 8367019 - 8367064
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgac 8367064  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 10818927 - 10818882
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgac 10818882  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 4192055 - 4192007
Alignment:
Q  183 aaattgctgttttgacatccattgtttcttagaaacacatggaaatgac 231  Q
    ||||||||||||  |||||||||||||| || ||||||||| |||||||    
T  4192055 aaattgctgtttacacatccattgtttcctacaaacacatgaaaatgac 4192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 4639576 - 4639536
Alignment:
Q  190 tgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  4639576 tgttttgaccttcattgtttcttagaaacacatgaaaatga 4639536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 26851186 - 26851229
Alignment:
Q  186 ttgctgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  26851186 ttgctgttttgacatcca-tgattcttagaaacacatgaaaatga 26851229  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 26851376 - 26851336
Alignment:
Q  190 tgttttgacatccattgtttcttagaaacacatggaaatga 230  Q
    |||||||||||| ||||||||||| ||||||||| ||||||    
T  26851376 tgttttgacatctattgtttcttaaaaacacatgaaaatga 26851336  T

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