View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_173 (Length: 231)
Name: NF20151_low_173
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_173 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31443880 - 31443650
Alignment:
| Q |
1 |
accaaccaccatagatggcgcggcccgcgcgggaaccccgcatcaactgctgcacctgctgcacaagcttcatcaccagcacaggcctcaccatcctctt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31443880 |
accaaccaccgtagatggcgcggcccgcgcgggaaccccgcatcaactgctgcacctgctgcacaagcttcatcaccagcacaggcctcaccatcctctt |
31443781 |
T |
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| Q |
101 |
cctctggctcacactaagaactcaacaaccaaaatgcttcattcagtcactctaccttccttctctcaacaaaactatcacttccaatcacaaacactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31443780 |
cctctggctcacactaagaactcaacaaccaaaatgcttcattcaatcactctaccttccttctctcaacaaaactatcacttccaatcacaaacactcc |
31443681 |
T |
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| Q |
201 |
atcaacaacactatcatcttcaacctcaaac |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31443680 |
atcaacaacactatcatcttcaacctcaaac |
31443650 |
T |
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