View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_177 (Length: 227)

Name: NF20151_low_177
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_177
NF20151_low_177
[»] chr4 (3 HSPs)
chr4 (78-227)||(2464104-2464258)
chr4 (3-56)||(6736824-6736876)
chr4 (9-49)||(6736865-6736905)
[»] chr3 (7 HSPs)
chr3 (100-227)||(24207433-24207562)
chr3 (1-60)||(29896993-29897051)
chr3 (1-56)||(45227373-45227427)
chr3 (3-56)||(13468092-13468145)
chr3 (19-56)||(45227408-45227445)
chr3 (1-56)||(13468056-13468111)
chr3 (1-56)||(45227454-45227508)
[»] chr7 (11 HSPs)
chr7 (37-223)||(15695218-15695408)
chr7 (37-223)||(15702198-15702388)
chr7 (1-60)||(15687963-15688022)
chr7 (1-60)||(15695556-15695615)
chr7 (1-60)||(15702536-15702595)
chr7 (1-56)||(15695524-15695579)
chr7 (1-56)||(15702504-15702559)
chr7 (1-50)||(15687937-15687986)
chr7 (30-60)||(15687999-15688029)
chr7 (30-60)||(15695592-15695622)
chr7 (30-60)||(15702572-15702602)
[»] chr8 (7 HSPs)
chr8 (3-56)||(21541868-21541921)
chr8 (1-56)||(21541796-21541851)
chr8 (1-60)||(21541828-21541887)
chr8 (1-56)||(21541976-21542031)
chr8 (4-56)||(21542012-21542064)
chr8 (1-60)||(21541936-21541995)
chr8 (1-56)||(21541904-21541959)
[»] scaffold0312 (4 HSPs)
scaffold0312 (1-56)||(18704-18759)
scaffold0312 (1-66)||(18659-18723)
scaffold0312 (1-56)||(18740-18794)
scaffold0312 (1-56)||(18629-18688)
[»] chr6 (9 HSPs)
chr6 (1-56)||(33296217-33296272)
chr6 (9-60)||(29934743-29934793)
chr6 (9-56)||(29934782-29934828)
chr6 (1-50)||(33296189-33296236)
chr6 (9-56)||(29934852-29934898)
chr6 (11-56)||(27314006-27314051)
chr6 (9-56)||(27575836-27575883)
chr6 (9-56)||(29934817-29934863)
chr6 (14-56)||(29934698-29934739)
[»] chr2 (8 HSPs)
chr2 (1-56)||(45682244-45682299)
chr2 (11-56)||(11951355-11951400)
chr2 (9-60)||(2743628-2743678)
chr2 (9-56)||(2743702-2743748)
chr2 (9-56)||(2743597-2743643)
chr2 (9-56)||(2743667-2743713)
chr2 (9-56)||(2743737-2743783)
chr2 (1-52)||(45682213-45682263)
[»] chr1 (4 HSPs)
chr1 (1-56)||(411811-411866)
chr1 (1-66)||(411847-411911)
chr1 (1-56)||(411776-411830)
chr1 (1-56)||(411882-411941)
[»] chr5 (5 HSPs)
chr5 (3-56)||(37369102-37369155)
chr5 (1-56)||(37369068-37369121)
chr5 (1-56)||(37369941-37369996)
chr5 (1-56)||(37369977-37370032)
chr5 (2-56)||(37369138-37369191)
[»] scaffold0927 (1 HSPs)
scaffold0927 (1-56)||(3482-3537)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 2464258 - 2464104
Alignment:
Q  78 atactattatcgtttaattcac-----gcattaattttgatcacttcacttgctattcaagctctcatcacctagttacaatttcgtattgatttttatc 172  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2464258 atactattatcgtttaattcacaggctgcattaattttgatcacttcacttgcttttcaagctctcatcacctagttacaatttcgtattgatttttatc 2464159  T
Q  173 atgtatgctagtaccagaaccttattactccttgaataaacaagcataaaagata 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2464158 atgtatgctagtaccagaaccttattactccttgaataaacaagcataaaagata 2464104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 6736824 - 6736876
Alignment:
Q  3 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||| |||||||||||||||||||| ||||| |||||| |||||| |||||||    
T  6736824 attatctcttcgttgtggcgaacggaaatatagcacatt-tctctttgttgtgg 6736876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 6736865 - 6736905
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttc 49  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  6736865 tctttgttgtggcgaacggagatatgccacattatttcttc 6736905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 24207433 - 24207562
Alignment:
Q  100 gcattaattttgat-cacttcacttgctattcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttatt 198  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||    
T  24207433 gcattaattttgattcacttcacttgctattcaatctctcatcacctagttacaatttaatattgatttttatcatgtatgctagtattagaaccttatt 24207532  T
Q  199 actccttg-aataaacaagcataaaagata 227  Q
    | | |||| |||||| ||||||||||||||    
T  24207533 atttcttgaaataaagaagcataaaagata 24207562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29896993 - 29897051
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  29896993 acattatcttttcgttgtggcgaacagagatataccacatt-tctcttcgttgtggtgaa 29897051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45227427 - 45227373
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  45227427 acattatctcttcgttgtggcgaacggagatataccacatt-tatcttcgttgtgg 45227373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 13468145 - 13468092
Alignment:
Q  3 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||| ||||||||||| || ||| |||||||||||||||||||||||||||||    
T  13468145 attatctcttcgttgtgacggacgaagatataccacattatctcttcgttgtgg 13468092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 45227445 - 45227408
Alignment:
Q  19 ggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45227445 ggcgaacggagatataccacattatctcttcgttgtgg 45227408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13468111 - 13468056
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||    
T  13468111 acattatctcttcgttgtggcgaaccgagatgtacaacattatctcttcgctgtgg 13468056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45227508 - 45227454
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||| ||||||||||||| |||||| |||||| |||||||    
T  45227508 acattatctcttcgttgtggtgaacggagatatatcacatt-tctctttgttgtgg 45227454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 15695408 - 15695218
Alignment:
Q  37 acattatctcttcgttgtggtgaatggacgtcaattttaaaatactattatcgtttaattcac-----gcattaattttgatcacttcacttgctattca 131  Q
    |||||||||||||||||||| ||| |||  | |||||||||||||||| | | |||||||||      ||||||| |||||||||||||||| |||||||    
T  15695408 acattatctcttcgttgtggagaacggatattaattttaaaatactatgaacatttaattcataggctgcattaactttgatcacttcacttactattca 15695309  T
Q  132 agctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttgaataaacaagcataaaa 223  Q
    | ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||  ||||| |||| ||||| ||||||||| |||||||||    
T  15695308 atctctcatcacctagttacattttcatattgacttttagcatgtatgctagta-tagaacattataactccctgaataaacgagcataaaa 15695218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 15702388 - 15702198
Alignment:
Q  37 acattatctcttcgttgtggtgaatggacgtcaattttaaaatactattatcgtttaattcac-----gcattaattttgatcacttcacttgctattca 131  Q
    |||||||||||||||||||| ||| |||  | |||||||||||||||| | | |||||||||      ||||||| |||||||||||||||| |||||||    
T  15702388 acattatctcttcgttgtggagaacggatattaattttaaaatactatgaacatttaattcataggctgcattaactttgatcacttcacttactattca 15702289  T
Q  132 agctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttgaataaacaagcataaaa 223  Q
    | ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||  ||||| |||| ||||| ||||||||| |||||||||    
T  15702288 atctctcatcacctagttacattttcatattgacttttagcatgtatgctagta-tagaacattataactccctgaataaacgagcataaaa 15702198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15688022 - 15687963
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  15688022 acattatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaa 15687963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15695615 - 15695556
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  15695615 acattatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaa 15695556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15702595 - 15702536
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  15702595 acattatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaa 15702536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15695579 - 15695524
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||    
T  15695579 acattatctcatcgttgtggtgaacggaaatataccacattatctcttcgttgtgg 15695524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15702559 - 15702504
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||    
T  15702559 acattatctcatcgttgtggtgaacggaaatataccacattatctcttcgttgtgg 15702504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15687986 - 15687937
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcg 50  Q
    ||||||| || ||||||||| ||||||| |||||||||||||||||||||    
T  15687986 acattatctcatcgttgtggtgaacggaaatataccacattatctcttcg 15687937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 15688029 - 15687999
Alignment:
Q  30 atataccacattatctcttcgttgtggtgaa 60  Q
    |||||||||||||||||||||||||||||||    
T  15688029 atataccacattatctcttcgttgtggtgaa 15687999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 15695622 - 15695592
Alignment:
Q  30 atataccacattatctcttcgttgtggtgaa 60  Q
    |||||||||||||||||||||||||||||||    
T  15695622 atataccacattatctcttcgttgtggtgaa 15695592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 15702602 - 15702572
Alignment:
Q  30 atataccacattatctcttcgttgtggtgaa 60  Q
    |||||||||||||||||||||||||||||||    
T  15702602 atataccacattatctcttcgttgtggtgaa 15702572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 21541921 - 21541868
Alignment:
Q  3 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21541921 attatctcttcgttgtggcgaacggaggtataccacattatctcttcgttgtgg 21541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21541851 - 21541796
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||    
T  21541851 acattatcttttcgttgtggtgaacggatatataccacattatctcttcgttgtgg 21541796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21541887 - 21541828
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||| |||||||||||||||||  | |||||||||||||||| ||||||||||||||    
T  21541887 acattatctcttcgttgtggcgaacataaatataccacattatcttttcgttgtggtgaa 21541828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21542031 - 21541976
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  21542031 acattatctcttcgttgtggcgaacagaggtataccacattatcccttcgttgtgg 21541976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 21542064 - 21542012
Alignment:
Q  4 ttatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  21542064 ttatctcttcattgtggcgaacgaggatataccacattatctcttcgttgtgg 21542012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21541995 - 21541936
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    |||||||  ||||||||||||||||||| ||||| |||||||||| || |||||||||||    
T  21541995 acattatcccttcgttgtggcgaacggaaatatatcacattatctttttgttgtggtgaa 21541936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21541959 - 21541904
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| | || ||||||| ||||||| |||||||| ||||||||||||||||||    
T  21541959 acattatctttttgttgtggtgaacggatatataccatattatctcttcgttgtgg 21541904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18759 - 18704
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  18759 acattatctcttcgttgtggcgaacggagattaaccacattatctcttcgttgtgg 18704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18723 - 18659
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaatggacg 66  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||    
T  18723 acattatctcttcgttgtggcaaacggagat-taccacattatctcttcgttgtggcgaacggacg 18659  T

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Target: scaffold0312; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18794 - 18740
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  18794 acattatctcttcgttgtggtgaacggagat-taccacattatctcttcgttgtgg 18740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18688 - 18629
Alignment:
Q  1 acattatttcttcgttgtggcgaacgga----gatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||||||||||    |||  |||||||||||||||||||||||    
T  18688 acattatctcttcgttgtggcgaacggacggagattaaccacattatctcttcgttgtgg 18629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33296272 - 33296217
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  33296272 acattatctcttcgttgtggcgaacggaaatataccacattatttcttcgttgtgg 33296217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 29934793 - 29934743
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  29934793 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggtgaa 29934743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 29934828 - 29934782
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29934828 tcttcgttgtggcgaacggagatataccacatt-tctcttcgttgtgg 29934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33296236 - 33296189
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcg 50  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  33296236 acattatttcttcgttgtggcgaacg--gatataccacattatctcttcg 33296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 29934898 - 29934852
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  29934898 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtgg 29934852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 27314006 - 27314051
Alignment:
Q  11 ttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||    
T  27314006 ttcgttgtagtgaacggagatagaccacattatctcttcgttgtgg 27314051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 27575836 - 27575883
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    |||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  27575836 tctttgttgtggtgaacggagatagaccacattttctcttcgttgtgg 27575883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 29934863 - 29934817
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  29934863 tcttcgttgtggcgaacggtgatacaccacatt-tctcttcgttgtgg 29934817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 29934739 - 29934698
Alignment:
Q  14 gttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  29934739 gttgtggtgaacggagatataccacatt-tctcttcgttgtgg 29934698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45682299 - 45682244
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  45682299 acattatctcttcgttgtggcaaacggggatataccacattatctcttcgttgtgg 45682244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 11951400 - 11951355
Alignment:
Q  11 ttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  11951400 ttcgttgtggcgaacggagatataccatattatctcttcgttgtgg 11951355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 2743678 - 2743628
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 60  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  2743678 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggtgaa 2743628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 2743748 - 2743702
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2743748 tcttcgttgtggcgaacggagatataccacatt-tctcttcgttgtgg 2743702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 2743643 - 2743597
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  2743643 tcttcgttgtggtgaacggagatataccacatt-tctcttcgttgtgg 2743597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 2743713 - 2743667
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2743713 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtgg 2743667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 2743783 - 2743737
Alignment:
Q  9 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2743783 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtgg 2743737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45682263 - 45682213
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgtt 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  45682263 acattatctcttcgttgtggcgaacggagatata-cacattatctctccgtt 45682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 411811 - 411866
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  411811 acattatctcttcgttgtggcgaacggagattaaccacattatctcttcgttgtgg 411866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 411847 - 411911
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaatggacg 66  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||    
T  411847 acattatctcttcgttgtggcaaacggagat-taccacattatctcttcgttgtggcgaacggacg 411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 411776 - 411830
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  411776 acattatctcttcgttgtggtgaacggagat-taccacattatctcttcgttgtgg 411830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 411882 - 411941
Alignment:
Q  1 acattatttcttcgttgtggcgaacgga----gatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||||||||||    |||  |||||||||||||||||||||||    
T  411882 acattatctcttcgttgtggcgaacggacggagattaaccacattatctcttcgttgtgg 411941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 37369155 - 37369102
Alignment:
Q  3 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  37369155 attatctctttgttgtggcgaacggaaatataccacattatctcttcgttgtgg 37369102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37369121 - 37369068
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  37369121 acattatctcttcgttgtggcgaacgga--tataccacattatctcttcgttgtgg 37369068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37369996 - 37369941
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||    
T  37369996 acattatctcttcgttgtggcgaacggaaatatgtcacattatctcttcgttgtgg 37369941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37370032 - 37369977
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    |||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  37370032 acattatcccttcgttgtggcaaacagagatataccacattatctcttcgttgtgg 37369977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 37369191 - 37369138
Alignment:
Q  2 cattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    |||||| |||||||||||||||||||| |||||||| |||||||||| |||||||    
T  37369191 cattatctcttcgttgtggcgaacgga-atataccaaattatctctttgttgtgg 37369138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3482 - 3537
Alignment:
Q  1 acattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 56  Q
    ||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||    
T  3482 acattatctcttcgttgtggggaacgaaaatataccacattatctcttcgttgtgg 3537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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