View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_18 (Length: 525)
Name: NF20151_low_18
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 21716108 - 21716439
Alignment:
| Q |
18 |
atctaggacgattggggg-aactactttaaaatcttatgctctctattcannnnnnnnnnnnnngcatattttgattgatctatgtttgag--tatgtac |
114 |
Q |
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| T |
21716108 |
atctaggacgattggggggaactactttaaaatctgatgttctctaatcatttatttttttcttgcatattttgattgatttatgtttgagagtatgtac |
21716207 |
T |
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| Q |
115 |
atgtttaattgctatgttgttgaagtgattaatgtgttaaaaactatttttcattgattaatattttgtaaagtgttattcaatcactcatcataatggc |
214 |
Q |
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| T |
21716208 |
acgtttaattgctatgttgttgaagtgattaatgtgttaaaaactatttttcattgattaatattttgtaaagtgttattcaatcactcatcataatgga |
21716307 |
T |
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| Q |
215 |
aattaacttattcataatttaaccctagatcaatcaattgtatattcttgttagtgattttattgttaattagagtacatttgatatatgattgtattgg |
314 |
Q |
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| T |
21716308 |
aattaacttattcatagtttaaccctagatcaatcaattgtatattcttgttagtaattttattgttaataagagtacatttgatatatgattgtattgg |
21716407 |
T |
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| Q |
315 |
ttttgtagttttgtgaattaactttgattgaa |
346 |
Q |
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| T |
21716408 |
ttttgtagttttgtgaattaactttgattgaa |
21716439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 338 - 447
Target Start/End: Original strand, 21720258 - 21720368
Alignment:
| Q |
338 |
ttgattgaataacatttgattcaatagtgaaagtctagttcaatattgaattatattttgtttgcattgtttaacttagtaat-ctttgttgcaagtgtc |
436 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||||| |
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| T |
21720258 |
ttgattgaataacaattgattcaatagtgaaagtcttgttcaatattgaattatattgtgtttgcattgtttagcttactaatcctttgttgcaagtgtc |
21720357 |
T |
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| Q |
437 |
acaaatccaat |
447 |
Q |
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| T |
21720358 |
acaaatccaat |
21720368 |
T |
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