View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_182 (Length: 211)
Name: NF20151_low_182
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_182 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 24598449 - 24598358
Alignment:
| Q |
102 |
tcttgaaaacgtacacaaatgtaaaagtggtgttaaagagagaaagaagcttaataaatagatacacaacaatacaaaaataagcacctaagt |
194 |
Q |
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| T |
24598449 |
tcttgaaaacgtacacaaatgtaaaagtggtgttaaagagagaaagaagcttaataaatagatacacaacaatac-aaaatatgcacctaagt |
24598358 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 24598537 - 24598482
Alignment:
| Q |
12 |
gatgaaccaataacagatattgctcctaccatattcctctctcacaaattcaaagtat |
69 |
Q |
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| T |
24598537 |
gatgaaccaataacagatattgctcctaccatattcc--tctcacaaattcaaagtat |
24598482 |
T |
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