View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_184 (Length: 210)
Name: NF20151_low_184
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_184 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 36331048 - 36330872
Alignment:
| Q |
19 |
attgaagttggcaaaaaatagaaagataaagttgattttgttacacatagaaacaaaatatttaggctcataccgtttcaaccaaaacattatatactag |
118 |
Q |
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| T |
36331048 |
attgaagttggcaaaaaatagaaagataaagttgattttgttacacatagaaacaaaatatttaggctcataccgtttcaaccaaaacattatatactag |
36330949 |
T |
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| Q |
119 |
tagaatataataaacataaccactttgtgtatttaatcttagctctgagatggatttgtttggtattatcccctttg |
195 |
Q |
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| T |
36330948 |
tagaatataataaacataaccactttgtgtatttaatcttagctctgagatggatttgtttggtattatcccctttg |
36330872 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 19273826 - 19273774
Alignment:
| Q |
133 |
cataaccactttgtgtatttaatcttagctctgagatggatttgtttggtatt |
185 |
Q |
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| T |
19273826 |
catacccactttgtgtatttaatcctagctatgagatggatttgtttggtatt |
19273774 |
T |
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