View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_187 (Length: 201)
Name: NF20151_low_187
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_187 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 1046601 - 1046764
Alignment:
| Q |
20 |
atcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacc |
119 |
Q |
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| T |
1046601 |
atcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacaattccaactcaaccatgttgatcataagcaacgaaggaaacc |
1046700 |
T |
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| Q |
120 |
tagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatcttt |
183 |
Q |
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| T |
1046701 |
tagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatcttt |
1046764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 1103628 - 1103794
Alignment:
| Q |
17 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaa |
116 |
Q |
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| T |
1103628 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaa |
1103727 |
T |
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| Q |
117 |
acctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatcttt |
183 |
Q |
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| T |
1103728 |
accttgaaatacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatcttt |
1103794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 1071411 - 1071577
Alignment:
| Q |
17 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaa |
116 |
Q |
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| T |
1071411 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgatgatccaatcaaggacaacaactccaactcaaccatgttgatcatgagcaaagagggaa |
1071510 |
T |
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| Q |
117 |
acctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatcttt |
183 |
Q |
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| T |
1071511 |
accttgaactacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatcttt |
1071577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 1087087 - 1087238
Alignment:
| Q |
32 |
agaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacctagtactacttt |
131 |
Q |
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| T |
1087087 |
agaatagtttgggttgcaaaccgtgatgatccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaaccttgaaatactta |
1087186 |
T |
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| Q |
132 |
ccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatcttt |
183 |
Q |
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| T |
1087187 |
ccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatcttt |
1087238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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