View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_19 (Length: 520)
Name: NF20151_low_19
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_19 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 100 - 500
Target Start/End: Original strand, 95527 - 95927
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
95527 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaag |
95626 |
T |
|
| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
95627 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
95726 |
T |
|
| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95727 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
95826 |
T |
|
| Q |
400 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
499 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95827 |
tattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
95926 |
T |
|
| Q |
500 |
t |
500 |
Q |
| |
|
| |
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|
| T |
95927 |
t |
95927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 100 - 501
Target Start/End: Original strand, 87511 - 87912
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
87511 |
tgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaag |
87610 |
T |
|
| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87611 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
87710 |
T |
|
| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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|
| T |
87711 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggac |
87810 |
T |
|
| Q |
400 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
499 |
Q |
| |
|
||||||| |||||||||| |||||| || | |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
87811 |
tattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttataggggcacgccgaagaggcatt |
87910 |
T |
|
| Q |
500 |
tg |
501 |
Q |
| |
|
|| |
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|
| T |
87911 |
tg |
87912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 87405 - 87474
Alignment:
| Q |
30 |
gagtgtggaccctcagctatggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
87405 |
gagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacag |
87474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 95440 - 95490
Alignment:
| Q |
49 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
95440 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
95490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 100 - 500
Target Start/End: Complemental strand, 40870755 - 40870355
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40870755 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaag |
40870656 |
T |
|
| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870655 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
40870556 |
T |
|
| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870555 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
40870456 |
T |
|
| Q |
400 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870455 |
tattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
40870356 |
T |
|
| Q |
500 |
t |
500 |
Q |
| |
|
| |
|
|
| T |
40870355 |
t |
40870355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 100 - 501
Target Start/End: Complemental strand, 40878772 - 40878371
Alignment:
| Q |
100 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
199 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
40878772 |
tgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaag |
40878673 |
T |
|
| Q |
200 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878672 |
tgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaaca |
40878573 |
T |
|
| Q |
300 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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|
| T |
40878572 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggac |
40878473 |
T |
|
| Q |
400 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
499 |
Q |
| |
|
||||||| |||||||||| |||||| || | |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
40878472 |
tattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttataggggcacgccgaagaggcatt |
40878373 |
T |
|
| Q |
500 |
tg |
501 |
Q |
| |
|
|| |
|
|
| T |
40878372 |
tg |
40878371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 40878878 - 40878809
Alignment:
| Q |
30 |
gagtgtggaccctcagctatggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40878878 |
gagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacag |
40878809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 40870842 - 40870792
Alignment:
| Q |
49 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870842 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
40870792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 392
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
303 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcg |
392 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||| |||||||||||| |
|
|
| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
319 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatgga |
398 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || | |||||| |||||| |||| |
|
|
| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 42730140 - 42730210
Alignment:
| Q |
304 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgc |
374 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| |
|
|
| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgc |
42730210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
303 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
357 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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