View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_20 (Length: 513)
Name: NF20151_low_20
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 223 - 496
Target Start/End: Original strand, 27935850 - 27936127
Alignment:
| Q |
223 |
aacaattccattccctgaaaatgtga----gatcttgaaagacatgtttcgtcccaccatttgaatacaaagttagatcaatattgcccacccaagtatc |
318 |
Q |
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| T |
27935850 |
aacaattccattccctgaaaatgtgagtgagatcttgaaagacatgtttcgtcccaccatttgaatacaaagttagatcaatattgctcacccaagtatc |
27935949 |
T |
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| Q |
319 |
tattatttgatttaatttaatgcatagcatagtattattacgccaattggtttatatggaatttcattgatcattttttggtaacaaaaatggtgtatga |
418 |
Q |
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| T |
27935950 |
tattatttgatttaatctaatgcatagcatagtattattacgccaattggtttatatggaatttcattgatcattttttggtaacaaaaatggtgtatga |
27936049 |
T |
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| Q |
419 |
agcgcaacacaagcataaatacatactagaacacagaatgcactttgaagttgcagtgcctggttaatactgtaatat |
496 |
Q |
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| T |
27936050 |
agtgcagcacaagcataaatacatactagaacacagaatgcactttgaagttgcagtgcctggttaatattgtaatat |
27936127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 27935742 - 27935838
Alignment:
| Q |
95 |
atttattttttaagaaatagagaggatatgtactaaggtaaacctaacttatttcaatggaaatcatccttaatggcttttggaatactatccaggt |
191 |
Q |
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| T |
27935742 |
atttattttttaagaaatagagaggatatgtactaaggtaaacctaacttatttcaatggaaatcatccttaatggcttttggaatactatccaggt |
27935838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 27935698 - 27935727
Alignment:
| Q |
1 |
taattaaatataaaccaaaattgcactaat |
30 |
Q |
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| T |
27935698 |
taattaaatataaaccaaaattgcactaat |
27935727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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