View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_21 (Length: 512)

Name: NF20151_low_21
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_21
NF20151_low_21
[»] chr4 (4 HSPs)
chr4 (222-495)||(27935850-27936127)
chr4 (94-190)||(27935742-27935838)
chr4 (1-103)||(27935616-27935722)
chr4 (15-89)||(8019934-8020012)
[»] chr8 (1 HSPs)
chr8 (15-57)||(9425458-9425500)
[»] chr7 (1 HSPs)
chr7 (21-69)||(44820387-44820435)
[»] chr5 (1 HSPs)
chr5 (18-61)||(19911091-19911134)
[»] chr1 (1 HSPs)
chr1 (36-71)||(10625185-10625220)
[»] chr2 (2 HSPs)
chr2 (20-70)||(22311727-22311777)
chr2 (20-69)||(36168689-36168738)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 222 - 495
Target Start/End: Original strand, 27935850 - 27936127
Alignment:
Q  222 aacaattccattccctgaaaatgtga----gatcttgaaagacatgtttcgtcccaccatttgaatacaaagttagatcaatattgcccacccaagtatc 317  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27935850 aacaattccattccctgaaaatgtgagtgagatcttgaaagacatgtttcgtcccaccatttgaatacaaagttagatcaatattgctcacccaagtatc 27935949  T
Q  318 tattatttgatttaatttaatgcatagcatagtattattacgccaattggtttatatggaatttcattgatcattttttggtaacaaaaatggtgtatga 417  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27935950 tattatttgatttaatctaatgcatagcatagtattattacgccaattggtttatatggaatttcattgatcattttttggtaacaaaaatggtgtatga 27936049  T
Q  418 agcgcaacacaagcataaatacatactagaacacagaatgcactttgaagttgcagtgcctggttaatactgtaatat 495  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27936050 agtgcagcacaagcataaatacatactagaacacagaatgcactttgaagttgcagtgcctggttaatattgtaatat 27936127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 27935742 - 27935838
Alignment:
Q  94 atttattttttaagaaatagagaggatatgtactaaggtaaacctaacttatttcaatggaaatcatccttaatggcttttggaatactatccaggt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27935742 atttattttttaagaaatagagaggatatgtactaaggtaaacctaacttatttcaatggaaatcatccttaatggcttttggaatactatccaggt 27935838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27935722 - 27935616
Alignment:
Q  1 tgcaattttggtttatatttaattaatgtcataaattctagaaaaatatgcatttatatcattgatt----tactaactatagtaatgaacatctttatt 96  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    |||||||||||||||||||||||||||||    
T  27935722 tgcaattttggtttatatttaattaatgtcataaattctagcaaaatatgaatttatataattgatttacttactaactatagtaatgaacatctttatt 27935623  T
Q  97 tattttt 103  Q
    |||||||    
T  27935622 tattttt 27935616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 8019934 - 8020012
Alignment:
Q  15 atatttaattaatgtcataaattctagaaaaatatgcatttatatcattgatttac----taactatagtaatgaacat 89  Q
    ||||| ||||||||||||| |||||||||| || ||||||||||||||  ||||||     ||||||||||||||||||    
T  8019934 atattcaattaatgtcatatattctagaaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacat 8020012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9425500 - 9425458
Alignment:
Q  15 atatttaattaatgtcataaattctagaaaaatatgcatttat 57  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  9425500 atatttaattaatgtcacaaattctacaaaaatatgcatttat 9425458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 44820435 - 44820387
Alignment:
Q  21 aattaatgtcataaattctagaaaaatatgcatttatatcattgattta 69  Q
    ||||||||||||| |||||||||| ||||||||||||||| || |||||    
T  44820435 aattaatgtcatatattctagaaatatatgcatttatatcttttattta 44820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 19911091 - 19911134
Alignment:
Q  18 tttaattaatgtcataaattctagaaaaatatgcatttatatca 61  Q
    |||||||||||||||| ||||||||||  |||||||||||||||    
T  19911091 tttaattaatgtcatatattctagaaatttatgcatttatatca 19911134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 10625220 - 10625185
Alignment:
Q  36 ttctagaaaaatatgcatttatatcattgatttact 71  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10625220 ttctagaaaaatatgtatttatatcattgatttact 10625185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 22311777 - 22311727
Alignment:
Q  20 taattaatgtcataaattctagaaaaatatgcatttatatcattgatttac 70  Q
    |||||||||||||| |||||| ||| || ||||||||||||||| ||||||    
T  22311777 taattaatgtcatatattctaaaaatatgtgcatttatatcatttatttac 22311727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 36168738 - 36168689
Alignment:
Q  20 taattaatgtcataaattctagaaaaatatgcatttatatcattgattta 69  Q
    ||||||||||||| |||| || ||| |||||||||||||||||| |||||    
T  36168738 taattaatgtcatcaattttaaaaatatatgcatttatatcatttattta 36168689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University