View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_26 (Length: 499)
Name: NF20151_low_26
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 191 - 377
Target Start/End: Original strand, 42414940 - 42415131
Alignment:
| Q |
191 |
ctggtcgcatttcaaaatacaaagtactcttgtacaaaaagaaaagtgaaagaagattgtcgaatttattaaaaagacacaaagttctattgagacaatt |
290 |
Q |
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| T |
42414940 |
ctggtcgcatttcaaaatacaaagtactcttgtacaaaaagaaaagttgaagaagattgtcgaatttattaaaaagacacaaagttctattgagacaatt |
42415039 |
T |
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| Q |
291 |
attttaaggtgtaacatccaatgttatataggttatgtat-----tcagattgtttttttatactggattctaactattgcattcaaagtaa |
377 |
Q |
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| T |
42415040 |
attttaaggtttaacatccaatgttatataggttatgtatttacctcagattgtttttttatactggattctaactattgcattcaaagtaa |
42415131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 42414770 - 42414878
Alignment:
| Q |
18 |
gcaataaccatgcacatcatctaaagacaacctaacccccaacttcaacacattttctggtttagtggaaaagaggatggaggaaataattaagtgaagt |
117 |
Q |
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| T |
42414770 |
gcaataaccatgcacatc---taaagacaacctaacccccaacttcaacacattttctggtttagtggaaaagaggatggaggaaataattaagtgaagt |
42414866 |
T |
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| Q |
118 |
tataggaataag |
129 |
Q |
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| T |
42414867 |
tataggaataag |
42414878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 42415176 - 42415236
Alignment:
| Q |
422 |
gaagggataatttatttatgacacctatttaattttgcaagtttatgaaatagaaaaagta |
482 |
Q |
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| T |
42415176 |
gaagggataatttatatatgacacctatttaattttgcacgtttatgaaatagaaaaagta |
42415236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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