View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_27 (Length: 489)
Name: NF20151_low_27
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 31484224 - 31483759
Alignment:
| Q |
18 |
atatccgttcacaaaaatatatagtaatgcaaaataatgctactttttcttgctcttgttggagaagattgaactcaaaccaaataggttagcaggagga |
117 |
Q |
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| T |
31484224 |
atatccgttcacaaaaatatatagtaatgcaaaataatgctactttttcttgctcttgctggagaagattgaactcaaaccaaataggttagcaggagga |
31484125 |
T |
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| Q |
118 |
acattcaaaacaggattaactctaacagaatgaccatgagatccataactcttattcaatggaggtttaagataactgtttgaaccagatgagttagaaa |
217 |
Q |
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| T |
31484124 |
acattcaaaacaggattaactctaacagaatgaccatgagatccataactcttattcaatggaggtttaagataactgtttgaaccagatgagttagaaa |
31484025 |
T |
|
| Q |
218 |
gccttgttgaagaaagtttctgtgaatttgatttaacagtactaataccctcttttgacaaagaattcctcttgttgttaacacttgaggtagaagatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31484024 |
gccttgttgaagaaagtttctgtgaatttgatttaacagtactaataccctcttttgacaaagaattcctcttgttgttaacacttgaggtagaagatcc |
31483925 |
T |
|
| Q |
318 |
agttgaattgcttctagataaaagtggtaaaggacacaaacttcttccatatccacttccacaactactacttctcttgaagctccaaaatgacttggaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31483924 |
agttgaattgcttctagataaaagtggtaaaggacacaaacttcttccatatccacttccacaactactacttctcttgaagctccaaaatgacttggaa |
31483825 |
T |
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| Q |
418 |
tttgaactttgtttctcacacacttcatcattcaaatacttgctttctttagtgctttcttctctc |
483 |
Q |
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| T |
31483824 |
tttgaactttgtttctcacacacttcatcattcaaatacttgctttctttagtgctttcttttctc |
31483759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 319 - 447
Target Start/End: Complemental strand, 7197373 - 7197245
Alignment:
| Q |
319 |
gttgaattgcttctagataaaagtggtaaaggacacaaacttcttccatatccacttccacaactactacttctcttgaagctccaaaatgacttggaat |
418 |
Q |
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|||||||||||| |||| | |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
7197373 |
gttgaattgcttttagaaagaagtggcaaaggacataaacttctaccatatccacttccacaactactacttctcttgaacccccaaaatgacttagaat |
7197274 |
T |
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| Q |
419 |
ttgaactttgtttctcacacacttcatca |
447 |
Q |
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| T |
7197273 |
ttgaactatgcttctcatccacttcatca |
7197245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 7197610 - 7197539
Alignment:
| Q |
73 |
ttgttggagaagattgaactcaaaccaaataggttagcaggaggaacattcaaaacaggattaactctaaca |
144 |
Q |
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||||||||||||||||||| |||||||| ||||| | | ||||||||||||||||||| |||| |||||| |
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| T |
7197610 |
ttgttggagaagattgaaccaaaaccaaaaaggtttgaataaggaacattcaaaacaggactaaccctaaca |
7197539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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