View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_28 (Length: 488)

Name: NF20151_low_28
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_28
NF20151_low_28
[»] chr3 (4 HSPs)
chr3 (50-480)||(1046079-1046505)
chr3 (298-480)||(1071133-1071318)
chr3 (298-480)||(1086797-1086982)
chr3 (334-480)||(1103383-1103535)
[»] chr2 (1 HSPs)
chr2 (9-104)||(27265173-27265268)
[»] chr8 (3 HSPs)
chr8 (18-100)||(43321563-43321645)
chr8 (22-95)||(7123763-7123836)
chr8 (22-96)||(24602247-24602321)
[»] chr4 (1 HSPs)
chr4 (22-100)||(51263020-51263098)
[»] chr1 (1 HSPs)
chr1 (18-100)||(48950460-48950542)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 50 - 480
Target Start/End: Original strand, 1046079 - 1046505
Alignment:
Q  50 caaagccataataacacgttaatctccaattaccagcttctctatcctccataataacacgttaacccttttatttatctatgaattgcataatatatgt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1046079 caaagccataataacacgttaatctccaattaccagcttctctatcctccataataacacgttaacccttttatttatctatgaattgcataatatatgt 1046178  T
Q  150 tgtattttttgatatgttgagagtaaactttgtcatgaccataataaaactcttttgcccggtgcgttgcacgggtcaaagactaattaataacatacaa 249  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||    
T  1046179 tgtattttttgatatgttgagagtaaactttgtcatcaccataataaaactcttttgcccggtgcattgcacgggtcaaagac----taataacatacaa 1046274  T
Q  250 acacatagtttagtcccaagtcaatttaacatgnnnnnnnnnnnnnnnaagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctg 349  Q
    |||||||||||||||||||||||||||||||||               |||||| ||||||||||||||| ||||| |||||||||  ||||||||||||    
T  1046275 acacatagtttagtcccaagtcaatttaacatgttttttttcttttttaagggatgtcaatttagcatatctaaacacacaaacatccaacgtgtgtctg 1046374  T
Q  350 catcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattcttaatctcttgttcttttttaaattatctaccgcaattgat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1046375 catcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattcttaatctcttgttcttttttaaattatctaccgcaattgat 1046474  T
Q  450 acaatcacccaatttcaatctcttgatgatg 480  Q
    |||||||||||||||||||||||||||||||    
T  1046475 acaatcacccaatttcaatctcttgatgatg 1046505  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 298 - 480
Target Start/End: Original strand, 1071133 - 1071318
Alignment:
Q  298 aagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatatt 397  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  1071133 aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcattcaatgcaaaatggccaatattcttcctatgatatt 1071232  T
Q  398 gtttgttattcttaatctc---ttgttcttttttaaattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatg 480  Q
    |||||||||||||||||||   |||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  1071233 gtttgttattcttaatctcatattgttcttctttcaattatctacctcaattgataccatcacccaatttcaatctcttaatgatg 1071318  T

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Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 298 - 480
Target Start/End: Original strand, 1086797 - 1086982
Alignment:
Q  298 aagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatatt 397  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  1086797 aaggaaagtcaatttagcatatataaacgcacaaacataaaatgtgtgtctgcctcaaactcaatcaatgcaaaatgaccaatattcttcctatgatatt 1086896  T
Q  398 gtttgttattcttaatctc---ttgttcttttttaaattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatg 480  Q
    |||||||||||||| ||||   |||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||||| ||||||    
T  1086897 gtttgttattcttagtctcctgttgttcttctttcaattatctacttcaattgataccatcacccaatttcaatctcttcatgatg 1086982  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 480
Target Start/End: Original strand, 1103383 - 1103535
Alignment:
Q  334 atataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattctt---aatctcttgttcttttt--- 427  Q
    ||||||| ||| | ||||||||||||||||| | ||||||||||||||  ||| |||| ||| || || | ||| ||   ||| | |||||||| ||       
T  1103383 atataacttgtatttgcatcaaattcaatcattccaaaatgaccaatacccttcctatcataatgcttttaattatttccaatttattgttcttcttctc 1103482  T
Q  428 taaattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatg 480  Q
    | ||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  1103483 tcaattatcaaccgcaattgatacaataacccaattccaatctcttgatgatg 1103535  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 27265268 - 27265173
Alignment:
Q  9 tcgaagaatatcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctccataat 104  Q
    |||||| | |||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||| ||| || |||||||||||||||||||||    
T  27265268 tcgaagtaaatcccaagcatcacgatgacgtgcacgttcagcaaaaccataataacaagttaatctctaatcactagcttctctatcctccataat 27265173  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 43321563 - 43321645
Alignment:
Q  18 atcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca 100  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  43321563 atcccaagcatcacgacgacgggcacgttcaggaaagccataataacaagttaatctccagtcaccagcttctctatcctcca 43321645  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 7123836 - 7123763
Alignment:
Q  22 caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatc 95  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| || |||||||||| |||||||||| ||||    
T  7123836 caagcatcacgacgacgagcacgttcaggaaagccataataacaagtcaatctccaatcaccagcttctttatc 7123763  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 24602321 - 24602247
Alignment:
Q  22 caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcc 96  Q
    |||||||| ||| |||  |||||||||  ||||||||||||| | ||||||||||||| || ||| |||||||||    
T  24602321 caagcatcgcgatgacaggcacgttcaggaaagccataataaaaagttaatctccaatcacgagcgtctctatcc 24602247  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 51263020 - 51263098
Alignment:
Q  22 caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca 100  Q
    |||||||||| ||||||  ||||||||  ||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  51263020 caagcatcacaacgacgaacacgttcaagaaagccataataacaagttaatctccaatcaccagcttctttatcctcca 51263098  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 48950460 - 48950542
Alignment:
Q  18 atcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca 100  Q
    ||||||||||||||||| ||| |||||||||  ||||| ||||||| | ||||||||||||| |||||||||| |||||||||    
T  48950460 atcccaagcatcacgactacgagcacgttcaggaaagcgataataataagttaatctccaatcaccagcttctttatcctcca 48950542  T

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